Pairwise Alignments

Query, 396 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 391 a.a., putative membrane transport protein (VIMSS) from Escherichia coli BW25113

 Score =  345 bits (886), Expect = e-99
 Identities = 170/373 (45%), Positives = 251/373 (67%)

Query: 20  VVAGFIAMMTGYTSSLVLMFQAGQAAGLTTAQISSWIWAISIGMAVCSIGLSLRYRTPIT 79
           ++AGF+A++ GY SS  +++QA   AG TTAQIS W+ A+ + M V ++ L+L YR P+ 
Sbjct: 11  LLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLTLTLWYRVPVL 70

Query: 80  IAWSTPGAALLITSLGGVSYGEAIGAYITCAVLVTICGMTGSFEKLVKRIPASLAAALLA 139
            AWSTPGAALL+T L G++  EAIG +I    L+ +CG+TG F +L++ IP SLAAA+LA
Sbjct: 71  TAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLA 130

Query: 140 GILFKIGSEIFVAAQHRTGLVLGMFFTYLVIKRLSPRYAVLAALLIGTALSGLMGLLDFS 199
           GIL + G + F +   +  L   M   +L  K ++PRYAV+AA++IG  +    G +  +
Sbjct: 131 GILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTT 190

Query: 200 GFHLEVATPVWTTPHFSLAATISIGIPLFVVAMTSQNMPGVAVLRADGYNVPASPLITAT 259
               +   P + TP FS A ++S+ +PLF+V M SQN PG+A ++A GY+ P SPLI  T
Sbjct: 191 DVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFT 250

Query: 260 GLASLVLAPFGSHGINLAAISAAICTGPHAHEDRNKRYTAAVWCGVFYGIAGVFGATLAA 319
           GL +LV +PFG + + +AAI+AAIC  P AH D+++R+ AA   G+FY +AG+FG+ +  
Sbjct: 251 GLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITG 310

Query: 320 LFAALPKELVLSIAALALFGSIINGLSIAMNEPKEREAALITFMVTASGLTLFSIGSAFW 379
           + AALP   +  +A LAL  +I   L  A++  +ER+AA++ F+VTASGLTL  IGSAFW
Sbjct: 311 MMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFW 370

Query: 380 GIVAGVLTLLILN 392
           G++AG +  ++LN
Sbjct: 371 GLIAGGVCYVVLN 383