Pairwise Alignments

Query, 770 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 799 a.a., adhesin-associated MmpL efflux pump (from data) from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 83/394 (21%), Positives = 154/394 (39%), Gaps = 52/394 (13%)

Query: 339 RLTLPGLSLSLATSCIGYLALAWTPFPALTQIAVFSAAGLVGAYLSAVCLLPALLK--GV 396
           +L LPG+ +++    +G++ L       + ++A+ ++ G+     + + LLP  +   G+
Sbjct: 343 QLFLPGM-IAILADAVGFITLLIIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYVGI 401

Query: 397 ELRPAQWPLRIAEC---LWRVRESLLKRVPSPVLLALVLLFCAGGLWHLNSK--NDIRQW 451
             +  +   + A C    WR+  +      +PV + L LL  AGGLW+  +    D+ Q 
Sbjct: 402 SKKAIERSKKDATCEHPFWRLLSNFASAKVAPVSVVLALLAFAGGLWYSQNLKIGDLDQ- 460

Query: 452 IGAP---PQLLEEAQAVARITGFQPTSQFFLVRAQDERQLLERQSALAQRLDQLVNMDKL 508
            GAP   P           I+ +  +S   ++  +   +     S +A   + +  M+  
Sbjct: 461 -GAPELRPDSRYNQDNNFIISNYSTSSDVLVIMVKTPSEKCSVHSTMAPIDELMWTMENT 519

Query: 509 KGYLALNQLVSLPAEQQQLRDALNTLTQHWQPLLALGVPASALQAEVTQLQALPTQTIEA 568
            G   +   +SL    +Q+   +N  +  W+    L      L   + +   L       
Sbjct: 520 PG---VQSAISLVTVSKQVIKGMNEGSLKWE---TLSRNPDILNNSIARADGLYNGDCSL 573

Query: 569 ALVGPLAEPWRTLWLGPVDGGVAAMVSLQGLNNPALLRVQAV--------DLPGVQLVDR 620
           A V                     +V L       L RV AV        D  G+Q +  
Sbjct: 574 APV---------------------LVFLNDHKAETLERVTAVAKAFADSHDKEGLQFLLA 612

Query: 621 LGDLNRVFADTQ-ISAAELKLMSCVLI---VLLLILPFGFGGALRIVALPLLAALCSLAS 676
            G+     A  + I +AEL ++  V I   V+ LI    F   L IV   +L ++   A 
Sbjct: 613 AGNAGIEAATNEVIKSAELTILILVYICVAVMCLITFRSFAATLCIVLPLVLTSVLGNAL 672

Query: 677 LGWLGQPLTLFSLFGLLLVTAISVDYAILMREQI 710
           + ++G  + + +L  + L   I VDY I +  ++
Sbjct: 673 MAYMGIGVKVATLPVVALGVGIGVDYGIYIYSRL 706



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 16/123 (13%)

Query: 212 QVADLLQASRTQASAHGAQLLAASGLLYAANGQQQATREITWVGGGATVGILLLL----- 266
           +V  + +A        G Q L A+G      G + AT E+      A + IL+L+     
Sbjct: 590 RVTAVAKAFADSHDKEGLQFLLAAGNA----GIEAATNEVI---KSAELTILILVYICVA 642

Query: 267 ---LLAFRRWRVLLAFV-PVLVGMLFGAVACVALFGHMHVMTLVLGSSLIGVAVDYPLHY 322
              L+ FR +   L  V P+++  + G      +   + V TL + +  +G+ VDY ++ 
Sbjct: 643 VMCLITFRSFAATLCIVLPLVLTSVLGNALMAYMGIGVKVATLPVVALGVGIGVDYGIYI 702

Query: 323 LSK 325
            S+
Sbjct: 703 YSR 705