Pairwise Alignments

Query, 474 a.a., cbb3-type cytochrome c oxidase subunit I from Pseudomonas simiae WCS417

Subject, 540 a.a., cytochrome-c oxidase, FixN chain from Agrobacterium fabrum C58

 Score =  620 bits (1599), Expect = 0.0
 Identities = 287/466 (61%), Positives = 359/466 (77%), Gaps = 3/466 (0%)

Query: 6   STAYNYKVVRQFAIMTVVWGIVGMGLGVFLAAQLVWPALNFDLPWTSFGRLRPLHTNAVI 65
           ++ Y  +VV+   I TV WG+VG  +GV +A QL +P LN   P+ +FGR+RPLHT+AVI
Sbjct: 65  NSEYFDEVVKYGVIATVFWGVVGFLVGVVVALQLAFPDLNI-APYFNFGRMRPLHTSAVI 123

Query: 66  FAFGGCALFASSFYSVQRTCQTRLFAPKIAAFCFWGWQLVILLAAISLPLGYTSSKEYAE 125
           FAFGG AL A+SFY VQRTC+ RLF   +  F FWG+ L I++AA    LG T  +EYAE
Sbjct: 124 FAFGGNALIATSFYVVQRTCRARLFGGNLGWFVFWGYNLFIIMAATGYLLGITQGREYAE 183

Query: 126 LEWPIDILITIVWVAYAIVFFGTVMKRNTKHIYVGNWFFGAFIITVAILHIVNNLEIPVS 185
            EW +DI +TIVWVAY   F GT++ R   HIYV NWF+ +FI+T+A+LHIVNNL +PVS
Sbjct: 184 PEWYVDIWLTIVWVAYLATFLGTILTRKEPHIYVANWFYLSFIVTIAMLHIVNNLAVPVS 243

Query: 186 L--TKSYSLYGGATDAMVQWWYGHNAVGFFLTAGFLGMMYYFVPKQAERPVYSYRLSIVH 243
               KSYS + G  DA+ QWWYGHNAVGFFLTAGFLGMMYYF+PKQ  RPVYSYRLSI+H
Sbjct: 244 FLGVKSYSAFSGVQDALTQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIIH 303

Query: 244 FWALITLYIWAGPHHLHYTALPDWAQSLGMVMSLVLLAPSWGGMINGMMTLSGAWHKLRS 303
           FWALI +YIWAGPHHLHYTALPDWAQ+LGMV S++L  PSWGGMING+MTLSGAW K+R+
Sbjct: 304 FWALIFMYIWAGPHHLHYTALPDWAQTLGMVFSIMLWMPSWGGMINGLMTLSGAWDKIRT 363

Query: 304 DPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMISIGALY 363
           DPI+R +V+++AFYGM+TFEGPMM+IK VN+LSHYTDWTIGHVH+GALGW  MI+ GA+Y
Sbjct: 364 DPIVRMMVMAVAFYGMATFEGPMMSIKAVNSLSHYTDWTIGHVHSGALGWNGMITFGAIY 423

Query: 364 HMIPKVFGREQMYSLGLINAHFWLATIGTVLYIASMWVNGIAQGLMWRAINEDGTLTYSF 423
           ++ PK++GR+++YSL L+N HFWLAT+G V+Y A MWV GI Q LMWR  +  G L YSF
Sbjct: 424 YLTPKLWGRDRLYSLQLVNWHFWLATLGIVVYAAVMWVAGIQQALMWREYDSQGFLVYSF 483

Query: 424 VETLVASHPGFIVRLVGGAVFLCGMFLMAYNTWRTVRSAQPVEATT 469
            E++ A  P +++R +GG +FL G  +MAYN   T+   Q  E  +
Sbjct: 484 AESVAALFPYYVMRALGGLMFLSGALIMAYNVTMTILGHQREEGAS 529