Pairwise Alignments

Query, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 534 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Variovorax sp. SCN45

 Score =  255 bits (652), Expect = 2e-72
 Identities = 189/541 (34%), Positives = 277/541 (51%), Gaps = 60/541 (11%)

Query: 1   MRNNQPVTQRERTFPAQQRLISTTDAKGVITYCNDAFVEISGFSRDELVRAPHNLVRHPD 60
           MR N PVT  E   P    L+S TD KG ITY N AFVE SG++ DEL+   HN+VRHPD
Sbjct: 1   MRVNLPVTGIEYELPRDAALVSRTDLKGRITYVNPAFVEASGYAVDELMGKAHNIVRHPD 60

Query: 61  VPPAVFAHMWSTLKQGLPWMGIVKNRCKTGDHYWVNAYVTPVFEGNQVVGYESVRIKPTA 120
           VPP  FA +W TL QGLPW GI+KNR   GD YWV A VTP+    +V GY SVR +P  
Sbjct: 61  VPPEAFADLWQTLGQGLPWTGIIKNRRSNGDFYWVLANVTPIRRDGRVQGYMSVRSRPDR 120

Query: 121 EQIRRAEALYHRINQG--------KSAIPQRDKWLPVLQDWLPFILVSQLSF---MIGAS 169
             +  A+ALY R+ +G        +  + QR    P+ Q  L  I V Q  F      A 
Sbjct: 121 ADVAEADALYRRLREGGAKGVTLQQGQVVQRGWMNPLAQ--LRRIPVRQRVFGATTAAAL 178

Query: 170 LNSHWGFA---------LAAGL------SVPLGLLGLSWQQRGLKRLLRLAEQTTSDPLI 214
           L    G A          +AG+      ++  G +G +    GL + L        D  +
Sbjct: 179 LTLGLGIAGWMEAGRLVASAGVHSWLPGALAAGGVGFALAWLGLGQFLGRTVFRPLDEAL 238

Query: 215 AQMYTDSRGAQARLEMSILSQEARLKTCLTRLQDT----AEHLNDQAAQSNTLAHNSSSG 270
                 + G  A+ E+    +   L   L ++          +    A   + +   +SG
Sbjct: 239 HVARAIAGGDLAKFEIRRGDEITGLLRALNQMSANLFAIVADVGTNVAGVMSASSQIASG 298

Query: 271 LERQRVETEQVATAVNQMAATTQEVASHVQRTADATQEANRLTGRGRDIAGETREAIQRL 330
            +     TEQ A+++ Q AA+ +E+ S V++ AD  ++AN+L     ++A +    + ++
Sbjct: 299 NQDLSSRTEQQASSLEQTAASMEELTSTVKQNADNARQANQLAVSASEVAVKGGSVVSQV 358

Query: 331 SVAVGETGVTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVA 390
              +G    +       S +I  ++ VI GIA QTN+LALNAA+EAARAGE G+GFAVVA
Sbjct: 359 VDTMGSINAS-------SRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVA 411

Query: 391 DEVRQLAQRTAESTGQIHALIAKLQQTAAAAVQTMDAGHRQAEEGVARVMEADQALVGIS 450
            EVR LAQR+A +  +I  LI         +V+ ++AG +Q       V EA + +  I 
Sbjct: 412 SEVRSLAQRSAAAAKEIKTLIGD-------SVEKVEAGSKQ-------VAEAGRTMEEIV 457

Query: 451 EAVAHITDMTTQIAAATEEQSSVAEEISRNISTIALLADQTSEQAMNSAQLSEELTHTAN 510
            +V  +TD+  +I  A++EQ+S  E+I++ I+ +    DQ ++Q   +A L EE + TA 
Sbjct: 458 GSVRRVTDIMGEITTASQEQTSGIEQINQAIAQM----DQVTQQ---NAALVEEASATAQ 510

Query: 511 T 511
           +
Sbjct: 511 S 511