Pairwise Alignments

Query, 204 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 78.6 bits (192), Expect = 7e-20
 Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 5   DDAHLLERLLKGEQRAYKELVTTYQSAMRAVAYAIVGQRH-ADEVVQDAWLSVVRNLAKF 63
           +D  L+ER+ +G++RA+  LV  YQ  +  +    V   H A +V Q+A++   R L  F
Sbjct: 6   EDQQLVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNF 65

Query: 64  EGRSSLKTWLLTITANAAKGRYKQNRREVLLDDLPSPHGTLGDDRFSPDDGHWAVAPYAW 123
            G S+  TWL  I  N AK       R     D+ S      D      D          
Sbjct: 66  RGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKD---------- 115

Query: 124 HQDTPEALLTEDELRKCLEHTLLSLSELQSSVLVLRERQGLELEEICNLLTLSLSNVRVL 183
             ++PE  L  DE+   +  T+  L E   + L LRE  GL  E+I +++   +  VR  
Sbjct: 116 -LESPERSLLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSR 174

Query: 184 LHRAR 188
           + RAR
Sbjct: 175 IFRAR 179