Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 694 a.a., DNA gyrase subunit B from Xanthobacter sp. DMC5

 Score =  439 bits (1130), Expect = e-127
 Identities = 254/564 (45%), Positives = 356/564 (63%), Gaps = 17/564 (3%)

Query: 7   YDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIH 66
           Y +  I+VL+GL+ VR+RPGMYIG TD    LHH+  EVVDNS+DEA+AGH   I + + 
Sbjct: 51  YTAAHIEVLEGLEPVRRRPGMYIGGTDS-KALHHLFAEVVDNSMDEAVAGHATFIEVQLG 109

Query: 67  PDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 125
            D  +TV DNGRGIPV+ H K  G SA EVIMT LHAGGKFD   Y+ SGGLHGVGVSVV
Sbjct: 110 ADGYLTVSDNGRGIPVEEHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVV 169

Query: 126 NALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGD-SETTGTQIHFKPSAETF-KNIHF 183
           NALS++L + V R+  ++ Q++  GVP+ P+K VG  +   GT++ F P  E F +  HF
Sbjct: 170 NALSDDLEVEVARNQTLYRQSFSKGVPQGPLKEVGRITNRRGTRVRFHPDPEIFGEGAHF 229

Query: 184 SWDILAKRIRELSFLNSGVGI-------VLK-DERSGKEELFKYEGGLRAFVEYLNTNKT 235
               + +  R  ++L  GV I       +LK  E   ++ +F++ GGL+ ++       T
Sbjct: 230 EPARVFRMARSKAYLFGGVEIRWSCDPELLKAGENIPEKTVFRFPGGLKDYLAADLEGNT 289

Query: 236 AVN-QVFHFNIQREDGIG-VEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRN 293
            V+  +F   IQ+  G G VE A+ W    + ++  + N IP  DGGTH  G R+ L + 
Sbjct: 290 LVHPDIFAGRIQKTGGHGSVEWAVAWVADADGSISSYCNTIPTPDGGTHENGLRTVLLKG 349

Query: 294 LNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 353
           L  + E  G  K+  + T GDD   G  A++SV V +P+F  QTKD+L ++E    VEQ 
Sbjct: 350 LKDHAERSGQGKRGAIIT-GDDVITGCAAMLSVFVREPEFQGQTKDRLATAEAARIVEQA 408

Query: 354 MGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413
           +   F  +L  NP +A  ++  +ID A  R   ++ +E++R K A+    LPGKLADC  
Sbjct: 409 LRDPFDHWLAANPVQASRLLDHVIDRAEERLRRKQEKEVSR-KTAVRKLRLPGKLADCSN 467

Query: 414 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 473
            + A SE+++VEGDSAGGSAKQ R+R+TQA+LPL+GKILNV  A  DK+ ++Q++  L  
Sbjct: 468 TEAAGSEIFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVANATRDKLAANQQLADLGQ 527

Query: 474 ALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQP 533
           ALGCG     Y    LRY  +IIMTDADVDG+HI +LL+T+FFRQ+P+LIE G++++A P
Sbjct: 528 ALGCGT-LAHYREADLRYEKVIIMTDADVDGAHIASLLVTYFFRQMPKLIEEGHLFLAVP 586

Query: 534 PLYKVKKGKQEQYIKDDDAMEEYM 557
           PLY++ +G +  Y +DD   E  +
Sbjct: 587 PLYRITQGAKTLYARDDAHRERLL 610



 Score = 53.5 bits (127), Expect = 4e-11
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 737 IQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGAD--QIFNTLMGDAVEPRRDFIE 794
           + R+KGLGEM P QL ETTMDP  R + RV++EDA  A    +   LMG+  E R  FI 
Sbjct: 622 VGRFKGLGEMMPAQLKETTMDPKTRTLQRVSVEDAERAATVDLVERLMGNKPEARFAFIS 681

Query: 795 SNA 797
             A
Sbjct: 682 ERA 684