Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

 Score =  376 bits (965), Expect = e-108
 Identities = 220/553 (39%), Positives = 325/553 (58%), Gaps = 21/553 (3%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           ++Y++ +I+VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   + +I
Sbjct: 7   SSYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHAKSVHVI 62

Query: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124
           +H D S+ V D+GRG+PVD+H EEGV   E+I+T LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 63  LHADHSLEVSDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 122

Query: 125 VNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVG--DSETTGTQIHFKPSAETFKNIH 182
           VNALS  + + V+R G  ++ T+  G     ++++G      TGT ++F P  + F +  
Sbjct: 123 VNALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDPKYFDSPK 182

Query: 183 FSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVE-YLNTNKTAVNQVF 241
           FS   L   ++  + L  G+ +  +D+ +G++  + YE GLR+++E  ++  +   N+ F
Sbjct: 183 FSISRLKHVLKAKAVLCPGLVVTFEDKGTGEKVEWHYEDGLRSYLEDSVSDFERLPNEPF 242

Query: 242 HFNIQREDGIGVEIALQW----NDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTY 297
             ++       V+ AL W     DS  E+   + N IP   GGTH+ G R  L   +  +
Sbjct: 243 CGSLAGNKE-AVDWALLWLPEGGDSVQES---YVNLIPTAQGGTHVNGLRQGLLDAMREF 298

Query: 298 IEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 357
            E   L  +  V    +D  E +  ++S+K+ +P+FS QTK++L S E    V   +   
Sbjct: 299 CEYRNLLPR-GVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDA 357

Query: 358 FSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPA 417
           FS +L E+P     +    I+ A  R    KA +   RK       LPGKLADC  +DP 
Sbjct: 358 FSLWLNEHPELGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPM 414

Query: 418 LSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGC 477
            SEL+LVEGDSAGGSAKQ R++  QAILPL+GKILN  +    ++++SQEV  +  A+G 
Sbjct: 415 RSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVAIGV 474

Query: 478 GIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYK 537
             G  +  + +LRY  I I+ DAD DG HI TLL   F +    L+E G++Y+A PPLY+
Sbjct: 475 DPGAAD--MSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPLYR 532

Query: 538 VKKGKQEQYIKDD 550
           +  GK+  Y  D+
Sbjct: 533 IDLGKEIYYALDE 545



 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 724 LDWLMAESTK-RHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGA-DQIFNTL 781
           LD L+AE  + +  + R+KGLGEMNP QL ETTMDP  RR++++T+ D   A  ++ + L
Sbjct: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLGDDFAATSEMMDML 611

Query: 782 MGDAVEP-RRDFIES 795
           +     P R+ ++ES
Sbjct: 612 LAKKRAPDRKSWLES 626