Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 869 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  869 bits (2246), Expect = 0.0
 Identities = 466/848 (54%), Positives = 589/848 (69%), Gaps = 54/848 (6%)

Query: 4   ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISI 63
           +N+Y   SI +L+GL+AVRKRPGMYIGDT DG+GLHH+VFEVVDNSIDEALAGHCDDI +
Sbjct: 28  DNSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 87

Query: 64  IIHPDESITVRDNGRGIP----VDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 119
            IH D SI+V DNGRGIP    +D   E   SAAE+ +T LHAGGKF+ NSYKVSGGLHG
Sbjct: 88  TIHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 147

Query: 120 VGVSVVNALSEELILTVRRSGKIWEQTY------------VHGVPKEPMKIVGDSETTGT 167
           VGVS VNALS  L L VRR GKI E  +            V GV   PMKI+GD++  GT
Sbjct: 148 VGVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLLETVSGVEVSPMKIIGDTDKRGT 207

Query: 168 QIHFKPSAETFK-NIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAF 226
           ++HF P  + FK N  F ++IL+KR+RELSFLN+GV I LKDER+GKE+ F   GG+R F
Sbjct: 208 EVHFLPDTQIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVRGF 267

Query: 227 VEYLNTNKTAVNQVFHFNIQREDG--------------IGVEIALQWNDSFNENLLCFTN 272
           VE++N  KT    V H N    +G              IGVE+A+QWN  +NE +LCFTN
Sbjct: 268 VEFINKGKT----VLHPNSFYAEGERPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCFTN 323

Query: 273 NIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPK 332
           NIPQRDGGTHL G R+A+TR +N YIE    AKK KV  TGDD REGL  ++SVKVP+PK
Sbjct: 324 NIPQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPK 383

Query: 333 FSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREM 392
           FSSQTKDKLVSSEV+  VE  +GK  +D+L E PN+AK++ GK+++AARAREAARKAREM
Sbjct: 384 FSSQTKDKLVSSEVRAPVEDIVGKLLTDYLQERPNDAKIICGKIVEAARAREAARKAREM 443

Query: 393 TRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKIL 452
           TRRKG LD  GLPGKLADCQEKDPAL E+YLVEGDSAGGSAKQGR+R+ QAILPL+GKIL
Sbjct: 444 TRRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKIL 503

Query: 453 NVEKARFDKMISSQEVGTLITALGCGIGR----------DEYNIDKLRYHNIIIMTDADV 502
           NVEKAR++K+++S E+ T+ITALG GIGR          D++N+ KLRYH IIIMTDADV
Sbjct: 504 NVEKARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDADV 563

Query: 503 DGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDDAMEEYMTQSAL 562
           DG+HIRTLLLTFF+RQ+PEL+ERG+IYIAQPPLYKVK GK+EQY+KD  A++ ++ + AL
Sbjct: 564 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKVAL 623

Query: 563 EDASLHLND-EAPGISGESLERLVNDFRMVMKTLKRLSRLYPQELTEHFIYLPAVSLEQL 621
           +DA +      +  +SG++L  L    ++    + RL      E         A+ L+  
Sbjct: 624 KDARIETGGASSTTLSGDTLAELARKHQVAEAVIARLRNFMDAEALRAIADGVALDLDTT 683

Query: 622 GDHAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRD 681
               A +      + +LR +  +G+  + S   D   +  L  +    HG        +D
Sbjct: 684 ---PAAEASAVALQAKLRELNTTGVPAEVSSEFDARTDKPLLRISRRHHGNIKSSVLTQD 740

Query: 682 FFGSNDYKTVVTLGAQLSTLLD-DGAYIQRGE----RKKQVKEFKEALDWLMAESTKRHT 736
           F    DY  +         LL  +GA ++RGE    ++++V +F++A+ WL++E+ +  +
Sbjct: 741 FVHGADYAALAEAANTFRGLLSPEGALVKRGEGERAKEEKVDDFRQAMKWLISEAERATS 800

Query: 737 IQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLMGDAVEPRRDFIESN 796
            QRYKGLGEMNP+QLWETTMDP  RR+LRV I+DAI AD++F  LMGD VEPRR+FIE N
Sbjct: 801 RQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFIEQN 860

Query: 797 ALAVSNLD 804
           AL  +N+D
Sbjct: 861 ALRAANID 868