Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 665 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  332 bits (852), Expect = 3e-95
 Identities = 210/570 (36%), Positives = 315/570 (55%), Gaps = 30/570 (5%)

Query: 2   SEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61
           S  + Y   SI+VLKGL+ V++RPGMY   TD+     H++ EV+DN+ DEALAGH   I
Sbjct: 13  SASSGYSEGSIRVLKGLEPVKQRPGMYTR-TDNPL---HIIQEVIDNAADEALAGHGKKI 68

Query: 62  SIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGLH 118
            + +H D S+++ D+GRGIP  +H EE     E++ T LHAGGKFD  S   Y  SGGLH
Sbjct: 69  KVTLHADGSVSIEDDGRGIPFGLHPEEKAPVVELVYTRLHAGGKFDKGSGGAYSFSGGLH 128

Query: 119 GVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPM---KIVGDSETTGTQIHFKPSA 175
           GVGVSV NALS+ L ++  R G I +  +  G   E +   K+       GT +   P A
Sbjct: 129 GVGVSVTNALSKRLEVSTHREGSIAKLAFSGGDVIEQLEVRKLEAGERKQGTTVRAWPDA 188

Query: 176 ETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKT 235
           + F+        L   +R  + L  GV + L +E++ + + + Y+GGL  ++     N  
Sbjct: 189 KYFETAALPMGELTHLLRSKAVLMPGVSVTLTNEKTKESQQWLYKGGLSDYLMQ-TLNGD 247

Query: 236 AVNQVFHFNIQRE-------DGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288
            V  +F      +       +G G +  + + +        + N IP   GGTH  G R 
Sbjct: 248 PVIPLFEGGGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGTHESGLRD 307

Query: 289 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348
            L   +  +IE   L  K  V    +D     + ++S KV DP+F  Q K++L S +   
Sbjct: 308 GLFTAVKGFIELHSLLPKG-VKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVR 366

Query: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408
            V   +      +L ++ +  K +    I AA+ R+  R  +++ +RKG+  +A LPGKL
Sbjct: 367 LVSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQ--RAGQKVEKRKGS-GVAVLPGKL 423

Query: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468
            DC+ KD + +E++LVEGDSAGGSAK GR++ +QAILPL+GK+LN  +   D++ ++ E+
Sbjct: 424 TDCESKDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANTEI 483

Query: 469 GTLITALGCGI--GRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERG 526
             +  A+G       D  ++  LRY  I I++DADVDGSHI+ LLLT FFR  P+LIE G
Sbjct: 484 HDISVAVGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIEAG 543

Query: 527 YIYIAQPPLYKV------KKGKQEQYIKDD 550
           ++Y+A+PPL++V      KK   + Y  D+
Sbjct: 544 HVYVAKPPLFRVDAPARGKKPASKVYALDE 573



 Score = 47.4 bits (111), Expect = 3e-09
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 719 EFKEALDWLMAESTKRH--TIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIE--DAIGA 774
           E    LD L  +  +    +I R+KGLGEM+ +QLWETT++P  RR+++V +   D    
Sbjct: 575 ELTATLDKLRKDGVREGAWSISRFKGLGEMSAEQLWETTLNPDTRRLMQVQLGRFDFTST 634

Query: 775 DQIFNTLMGDA-VEPRRDFIESNA 797
                 LMG      RR+ +E  A
Sbjct: 635 QGEITKLMGKGEAAARRELMELRA 658