Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 838 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  823 bits (2125), Expect = 0.0
 Identities = 453/833 (54%), Positives = 572/833 (68%), Gaps = 43/833 (5%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           N Y + SIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEV DN+IDEALAGHCD I I 
Sbjct: 15  NEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDRIVIT 74

Query: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKF----DDNSYKVSGGLHGV 120
           ++PD S++V DNGRGIP  +HKEEGVSAAEVIMT LHAGGKF    DDN+YKVSGGLHGV
Sbjct: 75  LNPDNSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGV 134

Query: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSET--TGTQIHFKPSAE-- 176
           GVSVVNALSE L L + R GK     + +G    P+K++GD+     GT++ F  S E  
Sbjct: 135 GVSVVNALSEWLDLNIWRDGKEHWMRFAYGDATAPLKVIGDAPEGKKGTRVTFLASTEKV 194

Query: 177 -----TFKN-IHFSWDILAKRIRELSFLNSGVGIVLKDER--SGKEELFKYEGGLRAFVE 228
                TFKN   + +D L  R REL+FLNSGV + L D R    KE    YEGG+ AFV+
Sbjct: 195 PGDGGTFKNQTEYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVELYYEGGIAAFVK 254

Query: 229 YLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288
           YL+ NK A+           D + +++AL+WNDS+ EN+LCFTNNIPQRDGGTHL  FR+
Sbjct: 255 YLDRNKNALMPDPIAIAGTRDDVTIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRA 314

Query: 289 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348
           ALTR LN+Y E  GL KK KV+ TG+D REGLTAI+SVK+PDPKFSSQTKDKLVSSEV+ 
Sbjct: 315 ALTRTLNSYAEKTGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQ 374

Query: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408
            +E  M    +++L ENP   K++V K+IDAA AREAA++ARE+TRRKGA+DIA LPGKL
Sbjct: 375 PLESLMADKMAEWLEENPGHGKMIVQKVIDAAAAREAAKRARELTRRKGAMDIASLPGKL 434

Query: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468
           ADCQE+DPA SEL+LVEGDSAGGSAKQGRNR  QAILPLKGKILNVE+ARFDKM+SS+EV
Sbjct: 435 ADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERARFDKMLSSKEV 494

Query: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528
           GTLI A+G GI RD++N+DKLRYH I+IMTDADVDG+HIRTLLLTFF+RQ+P++IE G++
Sbjct: 495 GTLIQAMGTGI-RDDFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQIIEAGHL 553

Query: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDF 588
           +IAQPPLYK  +G+ E Y+KD+ A+E+Y+  + ++  +L     A   +G+ L  L++  
Sbjct: 554 FIAQPPLYKASRGRSEVYLKDEAALEQYLVDNGVDTMALETTGGAR--TGDDLRSLIDHA 611

Query: 589 RMVMKTLKRLSRLYPQELTEHF----IYLPAVSLEQLGDHAAMQ-DWLAQYEVR----LR 639
           R +   ++ + R Y   + E         P +S  QL +  AM   W+A ++       R
Sbjct: 612 RRMRAVMRYVPRRYDPAIIEALGLTGALDPELSEAQLAERLAMAVAWIASHDPEGKWTGR 671

Query: 640 TVEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLS 699
             E  G  ++   R   + +V       I HG        +    +++       G++L 
Sbjct: 672 IAEGGGFHFERLWRGVTDHHV-------IEHGFLGSAEARKLHGTASEEAESYAKGSRLV 724

Query: 700 TLLDDGAYIQRGE--------RKKQVKEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQL 751
           +     A  + GE        +   +    E L+ +++   K  +IQRYKGLGEMN +QL
Sbjct: 725 SAKAVAAQDELGEDELPAVSAKGVNISRPSELLEAILSAGRKGLSIQRYKGLGEMNAEQL 784

Query: 752 WETTMDPAQRRMLRVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804
           WETT+DP  R MLRV +E A  AD+IF  LMGD VEPRR+FI+ NAL V+NLD
Sbjct: 785 WETTLDPDNRSMLRVEVEQADVADEIFTKLMGDVVEPRREFIQDNALNVANLD 837