Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

 Score =  381 bits (978), Expect = e-110
 Identities = 223/553 (40%), Positives = 325/553 (58%), Gaps = 21/553 (3%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           + Y++ +I+VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   + +I
Sbjct: 7   SAYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVI 62

Query: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124
           +H D S+ V D+GRG+PVD+H EEGVS  E+I+T LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 63  LHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 122

Query: 125 VNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGD--SETTGTQIHFKPSAETFKNIH 182
           VNALS ++ + V+R G  ++ T+  G     +++VG      TGT ++F P  + F +  
Sbjct: 123 VNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPK 182

Query: 183 FSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAF-VEYLNTNKTAVNQVF 241
           FS   L   ++  + L  G+ +  +D+ SG++  + YE GLR++ V+ +N  +   ++ F
Sbjct: 183 FSISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEFQRLPDEPF 242

Query: 242 HFNIQREDGIGVEIALQW----NDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTY 297
             ++       V+ AL W     DS  E+   + N IP   GGTH+ G R  L   +  +
Sbjct: 243 CGSLAGNKE-AVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMREF 298

Query: 298 IEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 357
            E   L  +  V    +D  E +T ++S+K+ DP+FS QTK++L S E    V   +   
Sbjct: 299 CEFRNLLPR-GVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDA 357

Query: 358 FSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPA 417
           FS +L  +P     +    I  A  R    KA +   RK       LPGKLADC  +DP 
Sbjct: 358 FSLWLNAHPELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPM 414

Query: 418 LSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGC 477
            +EL+LVEGDSAGGSAKQ R++  QAILPL+GKILN  +    ++++SQEV  +  A+G 
Sbjct: 415 RAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGV 474

Query: 478 GIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYK 537
             G  +  + +LRY  I I+ DAD DG HI TLL   F +    L+E G++Y+A PPLY+
Sbjct: 475 DPGATD--LAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYR 532

Query: 538 VKKGKQEQYIKDD 550
           +  GK+  Y  D+
Sbjct: 533 IDLGKEIYYALDE 545



 Score = 55.5 bits (132), Expect = 9e-12
 Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 724 LDWLMAESTK-RHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLM 782
           LD L+AE  + +  + R+KGLGEMNP QL ETTMDP  RR++++T++D     ++ + L+
Sbjct: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLL 611