Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 631 a.a., DNA topoisomerase IV subunit B from Pantoea agglomerans CFBP13505 P0401

 Score =  383 bits (983), Expect = e-110
 Identities = 228/563 (40%), Positives = 336/563 (59%), Gaps = 16/563 (2%)

Query: 1   MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD 60
           MS+ N Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEAL GH   
Sbjct: 1   MSQSN-YNADAIEVLTGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALGGHAKR 55

Query: 61  ISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120
           + +I+H D+S+ V D+GRG+PVD+H EEGV A E+I+  LHAGGKF + +Y+ SGGLHGV
Sbjct: 56  VEVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGV 115

Query: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGD--SETTGTQIHFKPSAETF 178
           G+SVVNALS+ + +TVRR+G+I++  + +G   + + + G      TGT++HF P    F
Sbjct: 116 GISVVNALSKRVEVTVRRNGEIYDMAFENGDKVQDLTVTGTVAKRNTGTRVHFWPDESFF 175

Query: 179 KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFV-EYLNTNKTAV 237
            +  FS   L+  ++  + L  GV IV KD+ +  E+ + YE GL  ++ E +N   T  
Sbjct: 176 DSPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTEQTWCYEDGLTDYLCEAVNGLPTLP 235

Query: 238 NQVFHFNIQREDGIGVEIALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSALTRNLNT 296
            + F  +    D   V+ AL W     E L   + N IP   GGTH+ G R  L   +  
Sbjct: 236 EKPFVGSF-AGDVEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 297 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGK 356
           + E   +  +  V  + +D  +    ++SVK+ DP+F+ QTK++L S +    V   +  
Sbjct: 295 FCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 357 YFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDP 416
            FS +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D 
Sbjct: 354 AFSLWLNQNIQIAEQLAELAISSAQRR--MRAAKKVVRKKLTSGPA-LPGKLADCTAQDL 410

Query: 417 ALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 476
             +EL+LVEGDSAGGSAKQ R+R  QAI+PLKGKILN  +   D++++SQEV  +  A+ 
Sbjct: 411 NKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI- 469

Query: 477 CGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLY 536
            GI  D  ++ +LRY  I I+ DAD DG HI TLL   F +    L+  G++Y+A PPLY
Sbjct: 470 -GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRSLVRNGHVYVAMPPLY 528

Query: 537 KVKKGKQEQYIKDDDAMEEYMTQ 559
           ++  GK+  Y  D+D  E  + Q
Sbjct: 529 RIDLGKEVYYALDEDEKEGVLEQ 551



 Score = 48.9 bits (115), Expect = 9e-10
 Identities = 21/34 (61%), Positives = 29/34 (85%)

Query: 737 IQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIED 770
           +QR+KGLGEMNP QL ETT+DP  RR++++TI +
Sbjct: 561 VQRFKGLGEMNPLQLRETTLDPNTRRLVQLTISE 594