Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 816 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Magnetospirillum magneticum AMB-1

 Score =  812 bits (2098), Expect = 0.0
 Identities = 434/814 (53%), Positives = 562/814 (69%), Gaps = 35/814 (4%)

Query: 7   YDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIH 66
           Y + SI+VL+GL+AVRKRPGMYIGDTDDGSGLH M++E VDN++DE + G  D   ++++
Sbjct: 21  YGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIMNGFGDRCDVVLN 80

Query: 67  PDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 126
            D S+ V DNGRGIPVD+H EEG+SAAEV +T LHAGGKF+ NS ++S GLHGVG+SVVN
Sbjct: 81  ADGSVLVTDNGRGIPVDIHPEEGISAAEVALTKLHAGGKFEQNSNRISSGLHGVGISVVN 140

Query: 127 ALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGD-SETTGTQIHFKPSAETFKNIHFSW 185
           ALSE L L + R GK     + HG P+ P+ +VG+  + TGTQ+ F PS  TF +  F +
Sbjct: 141 ALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGDRTGTQVVFLPSKGTFSHTDFDF 200

Query: 186 DILAKRIRELSFLNSGVGIVLKDERSG--KEELFKYEGGLRAFVEYLNTNKTAVNQVFHF 243
           D +  R+REL+FLNS   +++KDER    +E L  YEGG++AFV++L+ +K A++     
Sbjct: 201 DTVEHRLRELAFLNSRATLLIKDERHAETREALLHYEGGVQAFVQWLDRSKEALHAPILI 260

Query: 244 NIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGL 303
             ++ D + +E++++W DS++E  LCFTNN+PQ+DGGTHL GFR+ALTR +N Y    G+
Sbjct: 261 AAEK-DVVRLELSMEWTDSYHETCLCFTNNVPQKDGGTHLAGFRAALTRTINAYANDSGI 319

Query: 304 AKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLL 363
           AKK KV   GDD REGLT ++SVK+PDPKFSSQ K+KLVSSEV+  VE  +G+  +++  
Sbjct: 320 AKKEKVNLAGDDMREGLTCVLSVKMPDPKFSSQAKEKLVSSEVRPLVENLVGEKLAEWFE 379

Query: 364 ENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYL 423
           E+P EA+ VV K+++AA AREAARKARE+TRRKG LDIA LPGKLADCQE+DPALSEL++
Sbjct: 380 EHPAEARKVVTKVVEAAAAREAARKARELTRRKGVLDIATLPGKLADCQERDPALSELFI 439

Query: 424 VEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDE 483
           VEGDSAGGSAKQGRNR  QAILPLKGKILNVE+ARFDKM+SS E+GTLI A+G GIGR++
Sbjct: 440 VEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIGTLIAAMGTGIGRED 499

Query: 484 YNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQ 543
           +N+DK RYH IIIMTDADVDGSHIRTLLLTFF+RQ+P LIERGY+YIAQPPLY+ K+G+ 
Sbjct: 500 FNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPALIERGYLYIAQPPLYRAKRGQS 559

Query: 544 EQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKTLKRLSRLYP 603
           E Y+KDD A+EEY+    L DA L + D    ++   L  LV   R V   L  LSR  P
Sbjct: 560 EVYLKDDRALEEYLIDGGLADAVLRMAD-GTQLASIDLRALVEQARSVRNLLTPLSRRVP 618

Query: 604 QELTEHFIYLPAVSLEQLGDHA---AMQDWLAQYEVRLRT----------VEKSGLVYKA 650
            +L E      A+    L D     A+   LAQ    L T          VE  G  +  
Sbjct: 619 LKLVEQAAIADALDSSLLTDAVRGPAIVQGLAQRLDALETHLERGWTGTWVEGDGYTFSR 678

Query: 651 SLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQR 710
           +LR   E           +H L + V        S + + +  L  +L    D  A +  
Sbjct: 679 TLRGVTE-----------THALDSAV------IRSAEARRLHELAPRLRETFDRPAALMV 721

Query: 711 GERKKQVKEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIED 770
            ER+  +      +  +M +  +   IQRYKGLGEMNP+QLWETT+DP  R +L+V +  
Sbjct: 722 RERETVLSGPVALVTAVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKVAQ 781

Query: 771 AIGADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804
           A  A+Q+F+TLMGD VEPRRDFI++NAL VSNLD
Sbjct: 782 ADDAEQVFSTLMGDVVEPRRDFIQTNALKVSNLD 815