Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB from Escherichia coli ECRC101

 Score = 1107 bits (2863), Expect = 0.0
 Identities = 539/802 (67%), Positives = 661/802 (82%), Gaps = 3/802 (0%)

Query: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64
           N+YDS+SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMVFEVVDN+IDEALAGHC +I + 
Sbjct: 3   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62

Query: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124
           IH D S++V+D+GRGIP  +H EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 63  IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122

Query: 125 VNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETTGTQIHFKPSAETFKNI-HF 183
           VNALS++L L ++R GKI  Q Y HGVP+ P+ + G++E TGT + F PS ETF N+  F
Sbjct: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182

Query: 184 SWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVN-QVFH 242
            ++ILAKR+RELSFLNSGV I L+D+R GKE+ F YEGG++AFVEYLN NKT ++  +F+
Sbjct: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242

Query: 243 FNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEG 302
           F+ ++ DGIGVE+ALQWND F EN+ CFTNNIPQRDGGTHL GFR+A+TR LN Y++ EG
Sbjct: 243 FSTEK-DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301

Query: 303 LAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFL 362
            +KK KV+ TGDDAREGL A++SVKVPDPKFSSQTKDKLVSSEVK+AVEQ+M +  +++L
Sbjct: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361

Query: 363 LENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELY 422
           LENP +AK+VVGK+IDAARAREAAR+AREMTRRKGALD+AGLPGKLADCQE+DPALSELY
Sbjct: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421

Query: 423 LVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 482
           LVEGDSAGGSAKQGRNR+ QAILPLKGKILNVEKARFDKM+SSQEV TLITALGCGIGRD
Sbjct: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481

Query: 483 EYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGK 542
           EYN DKLRYH+IIIMTDADVDGSHIRTLLLTFF+RQ+PE++ERG++YIAQPPLYKVKKGK
Sbjct: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541

Query: 543 QEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKTLKRLSRLY 602
           QEQYIKDD+AM++Y    AL+ A+LH N  AP ++GE+LE+LV+++    K + R+ R Y
Sbjct: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY 601

Query: 603 PQELTEHFIYLPAVSLEQLGDHAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWL 662
           P+ + +  IY P ++   L D   +  W+      L   E+ G  +K  +  + E+N++ 
Sbjct: 602 PKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFE 661

Query: 663 PEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERKKQVKEFKE 722
           P V + +HG+      + +F    +Y+ + TLG +L  LL++ A+I+RGER++ V  F++
Sbjct: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQ 721

Query: 723 ALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLM 782
           ALDWL+ ES +  +IQRYKGLGEMNP+QLWETTMDP  RRMLRVT++DAI ADQ+F TLM
Sbjct: 722 ALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLM 781

Query: 783 GDAVEPRRDFIESNALAVSNLD 804
           GDAVEPRR FIE NAL  +N+D
Sbjct: 782 GDAVEPRRAFIEENALKAANID 803