Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 631 a.a., DNA topoisomerase IV subunit B from Dickeya dianthicola ME23

 Score =  379 bits (974), Expect = e-109
 Identities = 224/552 (40%), Positives = 332/552 (60%), Gaps = 15/552 (2%)

Query: 4   ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISI 63
           +++Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAGH   I +
Sbjct: 3   QSSYNADAIEVLSGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHARRIDV 58

Query: 64  IIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 123
           I+HPD+S+ V D+GRG+PVD+H EEGV A E+I+  LHAGGKF + +Y+ SGGLHGVG+S
Sbjct: 59  ILHPDQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 118

Query: 124 VVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVG--DSETTGTQIHFKPSAETFKNI 181
           VVNALS  + +TVRR G++++  + +G   + + + G      TGT++HF P    F + 
Sbjct: 119 VVNALSTRVEVTVRRDGQVYDIAFENGDKVQDLTVTGTCGRRNTGTRVHFWPDVTFFDSP 178

Query: 182 HFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFV-EYLNTNKTAVNQV 240
            FS   L   ++  + L  GV IV KD  +  E+ + Y+GGL  ++ E +N   T   + 
Sbjct: 179 RFSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTEQRWCYQGGLSDYLCEAVNGLPTLPEKP 238

Query: 241 FHFNIQREDGIGVEIALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSALTRNLNTYIE 299
           F   +   D   VE AL W     E L   + N IP   GGTH+ G R  L   +  + E
Sbjct: 239 F-IGVIPGDTEAVEWALLWLPEGGELLTESYVNLIPTLQGGTHVNGLRQGLLDAMREFCE 297

Query: 300 AEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFS 359
              +  +  V  + +D  E    ++S+K+ DP+F+ QTK++L S +    V   +   FS
Sbjct: 298 FRNILPR-GVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFS 356

Query: 360 DFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 419
            +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D   +
Sbjct: 357 LWLNQNVQAAEQLAEMAISSAQRR--MRAAKKVVRKKLTSGPA-LPGKLADCTLQDLNKT 413

Query: 420 ELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 479
           EL+LVEGDSAGGSAKQ R+R  QAI+PLKGKILN  +   D++++SQEV  +  A+  GI
Sbjct: 414 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GI 471

Query: 480 GRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVK 539
             D  ++ +LRY  + I+ DAD DG HI TLL   F R    L++ G++++A PPLY++ 
Sbjct: 472 DPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVQGGHVHVAMPPLYRID 531

Query: 540 KGKQEQYIKDDD 551
            GK+  Y  D++
Sbjct: 532 LGKEVYYALDEE 543



 Score = 49.3 bits (116), Expect = 7e-10
 Identities = 21/34 (61%), Positives = 29/34 (85%)

Query: 737 IQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIED 770
           +QR+KGLGEMNP QL ETT+DP  RR++++TI +
Sbjct: 561 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTINE 594