Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

Subject, 634 a.a., Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  253 bits (645), Expect = 3e-71
 Identities = 181/573 (31%), Positives = 285/573 (49%), Gaps = 58/573 (10%)

Query: 1   MSEENT-YDSTSIKVLKGLDAVRKRPGMYIGDTDDGS----GLHHMVFEVVDNSIDEALA 55
           M+E+N  Y   SI+ L   + +R RPGMYIG   DGS    G++ +V E++DNSIDE + 
Sbjct: 1   MAEKNVQYTEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLVKEILDNSIDEHMM 60

Query: 56  GHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSG 115
           GH   I I I  +  + +RD GRGIP+    +         ++ ++ GGK+D  +++ S 
Sbjct: 61  GHGRTIDIKIS-EHKVEIRDYGRGIPLGKVVD--------CVSKINTGGKYDSGAFQKSV 111

Query: 116 GLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETTGTQIHFKPSA 175
           GL+GVG   VNALS+   +   R G+     +  G   E   +   S+  GT+I F P A
Sbjct: 112 GLNGVGTKAVNALSQYFKVQSYRDGETKIAEFEKGELIEDRPVEKSSDRNGTKIVFSPDA 171

Query: 176 ETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKT 235
             FKN HF  + L  +I   +FLNSG+ I    ++   ++      GL   ++    + +
Sbjct: 172 TVFKNYHFIPEYLENQIWNYAFLNSGLTINFNGKKYFSDK------GLHDLLDRKVDDDS 225

Query: 236 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 295
               + H       G  +E+AL   + + E    F N      GGTHL  FR A+ + + 
Sbjct: 226 KRYPIIHLK-----GNDIEMALTHTNQYGEEYHSFVNGQYTTQGGTHLAAFREAIVKAVR 280

Query: 296 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV-------KT 348
            + +     K +  A    D R+ + A I+V+V +P F SQTK KL S  V       +T
Sbjct: 281 EFFK-----KDYDAA----DIRQSIAAAIAVRVQEPVFESQTKTKLGSHSVGPDGPTLRT 331

Query: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG-K 407
            V   +     ++L +N   A  ++ +++ + R R+     +++   +     A L   K
Sbjct: 332 FVNDFVKTELDNYLHKNQETANALLKRILQSERERKEISGIKKLANERAKK--ANLHNRK 389

Query: 408 LADCQ---------EKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKAR 458
           L DC+         E+    + L++ EGDSA GS  + R+ +TQA+  L+GK LN     
Sbjct: 390 LRDCRVHYDDVKANEEKKNDTMLFITEGDSASGSITKSRDVQTQAVFSLRGKPLNCFGMT 449

Query: 459 FDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQ 518
              +  ++E   L  AL       E  +D LRY  I+I TDADVDG HIR L++T+F + 
Sbjct: 450 KKVVYENEEFNLLQHALNI-----EDGVDGLRYRKIVIATDADVDGMHIRLLIMTYFLQF 504

Query: 519 LPELIERGYIYIAQPPLYKVKKGKQEQYIKDDD 551
            PEL++ G++YI   PL++V+  K+  Y   +D
Sbjct: 505 FPELVKNGHLYILDTPLFRVRNKKETIYCYSED 537