Pairwise Alignments

Query, 388 a.a., RNA-directed DNA polymerase from Pseudomonas simiae WCS417

Subject, 449 a.a., Group II intron-encoded protein LtrA from Alteromonas macleodii MIT1002

 Score = 42.7 bits (99), Expect = 2e-08
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 28/243 (11%)

Query: 131 AVLHCGAEWLIKLDLTNFFESILEPRVYKLFRSFGYQPLVAFELARLCTRVRKSGNPDRR 190
           +++  G  + + +DL+ FF+ +       L    GY+ +    L +L  R  ++G   + 
Sbjct: 151 SIIKTGRRFAVDVDLSKFFDRVNHDL---LMTYLGYK-VKDKRLLKLIKRYLRAGILCKT 206

Query: 191 FGNTTLPVGLPYSGDPRIGHLPQGAATSPRVANLVMQSLDENLQEYARENELVYSRYADD 250
            G+  L     YS + R G +PQG   SP +AN+++  LD+ L++   E    ++RYADD
Sbjct: 207 KGDNQL-----YS-ESREG-VPQGGPLSPLLANIMLDPLDKELEKRGHE----FARYADD 255

Query: 251 LVFSSKNAFDRSQVALHIKMINACLIKEGFWLNEAKTKIIPPGARKIVLGLLVDGDR--- 307
                K      +V   I       +K    +N  K+ ++     K  LG      R   
Sbjct: 256 FTILVKTPRSGERVLNSISRFLCHRLK--LVVNTTKSHVVKTSESKF-LGFTFKAGRIQW 312

Query: 308 -PRLTKSYKKYVTDHLYYLAHPNID-AMTHARHRGFQSLQGLINHVSGKIAYGFSVEPD- 364
            P+    +K+ V      L + N   +M +   +  Q L+G IN+      Y   VE D 
Sbjct: 313 HPKTLMKFKQQVR----RLTNRNWGVSMQYQLFKLSQYLRGWINYFGIASGYQRCVELDH 368

Query: 365 WAR 367
           W R
Sbjct: 369 WIR 371