Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 570 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  251 bits (641), Expect = 4e-71
 Identities = 142/364 (39%), Positives = 215/364 (59%), Gaps = 4/364 (1%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           FS   L E +++A+ E   V PTP+QA AIP  L GRDL   AQTG+GKTAAF LP+L+R
Sbjct: 28  FSSLGLAEPIVRALTEANHVTPTPIQAEAIPQVLAGRDLIGIAQTGTGKTAAFALPILDR 87

Query: 62  LIGPAKVR--VSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLR 119
           L+   +     S++ L+L PTREL+ Q +   E+F +   I   +  GG     Q   L 
Sbjct: 88  LVRHPRRPDPKSVRALVLSPTRELSGQIVDNFEKFGRHARISVTLAIGGVPMGRQIRALA 147

Query: 120 KVPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQT 179
           +  D+L+ TPGR+++ +    + L +VEVLVLDEAD+MLDMGF   ++ +V    +++ +
Sbjct: 148 RGVDVLVATPGRLMDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHS 207

Query: 180 MLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLA 239
           + FSAT   + + E+   +L++P  + V  V+       Q+++  D   +K Q+L  +L+
Sbjct: 208 LFFSATMPPA-IAELAGGMLHDPVRVAVTPVAKTADRVEQRVIHVD-KPNKGQLLAEVLS 265

Query: 240 NETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVA 299
            E   +A+VF  T+  AD++   L      A  +HG K Q  R   +   + G ++ L+A
Sbjct: 266 TEEIDRALVFARTKHGADKVVRVLAKCGIAAEAIHGNKSQNQRDRVLLAFREGKIRTLIA 325

Query: 300 TDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIE 359
           TD+AARG+DV G+  VIN+D+P   + YVHRIGRT RAG +G+AIS   H +   + SIE
Sbjct: 326 TDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAYLKSIE 385

Query: 360 RYLK 363
           R +K
Sbjct: 386 RLIK 389