Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  268 bits (686), Expect = 3e-76
 Identities = 153/374 (40%), Positives = 219/374 (58%), Gaps = 17/374 (4%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           F+   L E L++A+    + +PTPVQ  AIP  L+GRDL V AQTG+GKT  F LP+L R
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 62  LI-----------GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGED 110
           L            GP + RV    L+L PTRELA Q     + +++   + S  I GG  
Sbjct: 63  LFPAGHPDKSQRHGPRQPRV----LVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVG 118

Query: 111 FKVQAAMLRKVPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLV 170
              Q   + K  D+L+  PGR+++    G +DL  VE+LVLDEADRMLDMGF  DV++++
Sbjct: 119 MNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVL 178

Query: 171 SECVNRQQTMLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHK 230
           +    ++Q +LFSAT     + ++  K+L+NPE ++V   +       Q++     + HK
Sbjct: 179 ARLPAKRQNLLFSATFS-KDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPAS-HK 236

Query: 231 EQILNWLLANETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLK 290
             +L  L+    +++ +VFT T+  A+R+   L  Q   A  +HG K Q  R  A+   K
Sbjct: 237 RALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFK 296

Query: 291 AGGVKILVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHG 350
           A  V++LVATD+AARGLD+D L  V+NF++P   ++YVHRIGRTGRAG  G AISL+   
Sbjct: 297 ANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPD 356

Query: 351 DWNLMSSIERYLKQ 364
           +  L+ SIER  KQ
Sbjct: 357 EEKLLKSIERVTKQ 370