Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

 Score =  675 bits (1741), Expect = 0.0
 Identities = 341/445 (76%), Positives = 384/445 (86%), Gaps = 7/445 (1%)

Query: 1   MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLN 60
           MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLAL+GRDLRVTAQTGSGKTAAFVLP+LN
Sbjct: 1   MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLN 60

Query: 61  RLIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120
           RL+  +  RV I+ LILLPTRELAQQTLK+V+ FSQFT+IKSG++TGGEDFK QAAMLRK
Sbjct: 61  RLVDLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK 120

Query: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180
           VPD+LIGTPGR++EQLNAGNLDL  V+VL+LDEADRMLDMGFA+D++RL  EC NR+QT+
Sbjct: 121 VPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTL 180

Query: 181 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN 240
           LFSATTGG+ LR+++ KVL +PEHL +N+VS L   TRQQI+TADH+ HKEQI  WLLAN
Sbjct: 181 LFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLAN 240

Query: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
           ET+ KAI+FTNTRA ADRIYG LVA++ KAFVLHGEKDQKDRKLAI+R K G  K+LVAT
Sbjct: 241 ETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT 300

Query: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
           DVAARGLD+DGLDLVINFDMPRSGDEYVHR+GRTGRAG +GLAISLI H DWNLMSSIER
Sbjct: 301 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 360

Query: 361 YLKQSFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKTDAK-GDKKKTGAKSPTKRKIAN 419
           YLKQ FERR IKEVKGTY GPKKVKASGKA G KKKK + K GDKK    + PT +  AN
Sbjct: 361 YLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKPKAN 420

Query: 420 RPKTDNLSLVSKDGMAPLKRRKPEA 444
            P      L S DG+APLK+RKP A
Sbjct: 421 AP------LASADGLAPLKKRKPAA 439