Pairwise Alignments

Query, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 444 a.a., ATP-dependent RNA helicase SrmB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  286 bits (733), Expect = 7e-82
 Identities = 177/442 (40%), Positives = 237/442 (53%), Gaps = 16/442 (3%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61
           FS+  L E LL A+ +  F  PT +QAAAIP AL+GRD+  +A TG+GKTAA++LP L  
Sbjct: 6   FSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65

Query: 62  LIG-PAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLRK 120
           L+  P K     + LIL PTRELA Q        ++ T +    ITGG  +   A +  +
Sbjct: 66  LLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSE 125

Query: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTM 180
             DI++ T GR+++ +   N D + VE L+LDEADRMLDMGFA D++ +  E   R+QTM
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTM 185

Query: 181 LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN 240
           LFSAT  G  +++   ++L +P  +  N  +       Q    AD+  HK  +L  LL  
Sbjct: 186 LFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLKHLLKQ 245

Query: 241 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 300
           +   ++IVF   R     +   L         L GE  Q  R   I RL  G V +LVAT
Sbjct: 246 DDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVAT 305

Query: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360
           DVAARG+D+  +  VINFDMPRSGD Y+HRIGRTGRAG  G AISL+   D  L+  I R
Sbjct: 306 DVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLLLKIGR 365

Query: 361 YLKQSFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKTDAKGDKKKTGAKSPTKRKIANR 420
           Y+++  + R I E++ T   P     S K  G   KK  AK  +KK   +    R     
Sbjct: 366 YIEEPLKARVIDELRPTTRAP-----SEKLTGKPSKKVLAKRAEKKKEKEKEKPRVKKRH 420

Query: 421 PKTDNLSLVSKDGMAPLKRRKP 442
             T N+           KRRKP
Sbjct: 421 RDTKNIG----------KRRKP 432