Pairwise Alignments

Query, 402 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 410 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 106/410 (25%), Positives = 169/410 (41%), Gaps = 37/410 (9%)

Query: 7   LLASFVALMMAMGIGRFALTPQMPHLLSEGQIDLTGAGLIAAANYLGYFVGAV--DSIFA 64
           + A   A ++++G+ RFA TP +P L+            + AAN +GY +GA+    I  
Sbjct: 16  IFAGLCASLVSIGLARFAYTPLIPTLIQAQWFSANDVVYLGAANLVGYLIGALIGRPIAQ 75

Query: 65  RSHHHVRGRLYGGLWLCVLLTLASYGAHGF-----WPHLLLRFGTGVASAWALVMITSLS 119
           R+ +    R+     + V +TLA + A GF     W     R  +G+A    +V++ +  
Sbjct: 76  RTSNKTALRM-----MMVAVTLAFF-ACGFPLSVVW-FFAWRLLSGIAGGAIMVLVAATV 128

Query: 120 QPLAIAAGRPRLGALVFAGPGLGILLTGLLALGSNLMGQNSATLWLVYGGVALVMLLAIL 179
            P   AA R      +F G GLGI  +G L     L+       W   G +ALV+  A  
Sbjct: 129 LPHVPAARRGLASGAIFLGIGLGIAGSGTLV--PPLLNLGLQQTWFGLGLLALVLTGASW 186

Query: 180 PFLPKPSATGTPVAGHVDTGRNA---SIAHLCWIYVLYGLGYIIPAT--FLSQMASAQFK 234
              P    TGT       TG +A   S  +L +    +    ++PA    +  +A     
Sbjct: 187 FAWP----TGTLHEAAAPTGTSAPTPSGVYLLFAQYAFMAAGLVPAMVFLVDYVARGLGD 242

Query: 235 GAWQADLFWPCFGLAAAIGVVVATLRRKDPDTTRRWLMTTLWLQAAGV-FACLLGNGWGL 293
           GA    + W  +GL A +G V       D    R  +   L +QA  V      G+   L
Sbjct: 243 GAHIGAMIWVMYGLGAIVGPVTYGF-LADKLGARLSIRVVLVVQAIAVGLLPFTGSFTAL 301

Query: 294 ALGVLLCGGPFLACMQLVMARLRDVAPHGYQRNT--GMLTASFAIGQLSGPLLASVSSHL 351
           A+  ++ G      + L +AR+ ++ P+ +Q++      T SFA  Q       S   + 
Sbjct: 302 AVLAVVLGSFPPGIVPLALARVHELLPNHHQQHVAWSRATVSFATFQALSGFAYSALFNS 361

Query: 352 SGGLQPALVVAGAGLLVA------GSILISRQPAAQAHAPVHAASTPGKI 395
           SGG    L +  AG +V       G I+++R+P      P H     G +
Sbjct: 362 SGGQHALLFMIAAGAIVVALALELGMIVLNRRPLDT--VPTHTLIAAGNL 409