Pairwise Alignments

Query, 234 a.a., DNA replication initiation factor from Pseudomonas simiae WCS417

Subject, 248 a.a., DnaA regulatory inactivator Hda from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  198 bits (503), Expect = 9e-56
 Identities = 106/231 (45%), Positives = 147/231 (63%), Gaps = 4/231 (1%)

Query: 3   PIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKHGVGRTHLL 62
           P QL L + L DD TF +++PG N++ L  ++ +   +       IYLW + G GR+HLL
Sbjct: 19  PAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHS---GYIYLWAREGAGRSHLL 75

Query: 63  QAACLRFEQMGEPAVYLPLAELMDRGIGIFDHLEQYELVCLDDLQAIAGKAEWEEALFHL 122
            AAC    Q G+   Y+PL +       + D +E   LVC+D+++ IAG   WE A+F L
Sbjct: 76  HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDL 135

Query: 123 FNRLRDSGR-RLLIAASTSPRELPIKLADLKSRMTLALIFQMRPLSDEDKLRALQLRASR 181
           +NR+ +SG+ RLLI     PR+L + L DL SR+    I++++PLSDEDKL+ALQLRA  
Sbjct: 136 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 195

Query: 182 RGLHLTDEVGHFILTRGTRSMSALFDLLEQLDQASLQAQRKLTIPFLKETL 232
           RG  L ++VG F+L R  R M  LF  L+QLD+AS+ AQRKLTIPF+KE L
Sbjct: 196 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 246