Pairwise Alignments

Query, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417

Subject, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

 Score =  109 bits (272), Expect = 3e-28
 Identities = 88/316 (27%), Positives = 141/316 (44%), Gaps = 31/316 (9%)

Query: 144 SVTGLEGVTDERGS--------VAVDDRTNNIIAYQTVERLEELRRIVAQLDIPVRQVMI 195
           S TG  G + ++ +        +  D  TN ++          LR ++  LD    QV+I
Sbjct: 395 STTGTSGTSQDQDTSFSAGGVTIQADATTNTLLISAPDPLYRNLREVIDMLDQRRAQVVI 454

Query: 196 EARIVEANVDYDKSLGARW-----GGRLNRG--NWGAGGIAKPPPEGAAPPENPPPSPFV 248
           E+ IVE   D     G +W     GG+   G  N G  G+   P    +    P     +
Sbjct: 455 ESLIVEVGEDDATEFGVQWQAGNLGGKGGFGGVNLGGSGVNSTPTSKTSIDVLPKG---L 511

Query: 249 DLGSLTGTSGL-GIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEI 307
           ++G + GT  + GI  + D   L +   A++  G   ++S P ++T D E A I  G  I
Sbjct: 512 NVGLVDGTVDIPGIGKVLD---LKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTI 568

Query: 308 PYQESS---SSGATS------VSFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKL 358
           P+   S     G TS      V  +E  L L V PQI+    V +++       D    +
Sbjct: 569 PFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSTVDERASV 628

Query: 359 NDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAE 418
                  K  ++  +L+ DG+ +V+GG+  +  S+  D VP+L D+P LG LFR +  + 
Sbjct: 629 TAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLGALFRNEKRSV 688

Query: 419 KKSELLVFLTPRIMNN 434
            K+ L+VFL P I+ +
Sbjct: 689 SKTNLMVFLRPYIIRD 704



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 27  GDK-LSLNFQSIELRTALQQIADVAGLNLVASDDVQGSITLRLK-DVSWDQALDLVLQA- 83
           GD+ + LNF   +++  ++ ++   G   +    V+G++TL  +  V   QA D++L A 
Sbjct: 86  GDQPVQLNFVDADIQAVVRALSRATGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAAL 145

Query: 84  --KGLDKRVKAGVLLVAPAEELAARELLTLESRKQMAELAPLRRELLQVNYAKAADLAKL 141
             +G       GV  V P  +        L      A  + ++    ++ Y  A +L   
Sbjct: 146 RMQGFSVVDVGGVAQVVPEADAK-----LLGGPIYTAGSSGMQTRTFRLQYENAVNL--- 197

Query: 142 FQSVTGLEGVTDERGSVAVDDRTNNIIAYQTVERLEELRRIVAQLDIP 189
              +  L  +      +      N+I+     E L  + +I+  +D P
Sbjct: 198 ---IPVLRPIVSPNNPINAYPGNNSIVITDYAENLARVAQIINGIDTP 242