Pairwise Alignments

Query, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417

Subject, 463 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Variovorax sp. SCN45

 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 27/292 (9%)

Query: 157 SVAVDDRTNNIIAYQTV-----ERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLG 211
           S ++D  T + +A  T      E+ + + R V  +++    V +E ++VE N    K  G
Sbjct: 140 SGSMDSMTAHQVARDTALASNGEKADLIDRSV--VNVRSNTVQVEVKVVEFNRSVLKQAG 197

Query: 212 AR-WGGRLNRGNWGAGGIAKPPPEGAAPPENPPPSPFVDLGSLTG------TSGLGIAYI 264
              +  R N   +  G  +         P +   S F   G +        T    + + 
Sbjct: 198 LNIFSTRPNSSGFSFGVFS---------PSSLISSTFAANGQIAVQYNNPLTQAFDLLFN 248

Query: 265 TDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGATSVSFKE 324
                + L    +E  G   ++++P +V    ++A  L G E+P       G  S+ +K 
Sbjct: 249 FSKAGIGLNFGFLEGNGMARVLAEPTLVALSGQSASFLAGGELPIPVPQGLGTISIEYKP 308

Query: 325 ASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLN----DVPPIKKNEVNAKVLVKDGET 380
             + L +TP +  ++R++++V     + DY N +      VP I     +  V + DGE+
Sbjct: 309 FGIGLTLTPTVLSNERIVLKVAPEASDLDYTNAITLNGVVVPAITTRRADTTVELGDGES 368

Query: 381 IVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKSELLVFLTPRIM 432
            +IGG+ S T +    KVP LGD+P +G  F ++     + EL++ +TP ++
Sbjct: 369 FIIGGLVSRTTTSNASKVPMLGDLPIIGTFFSKNNYQMNEKELVILVTPHLV 420