Pairwise Alignments

Query, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417

Subject, 863 a.a., General secretion pathway protein D from Variovorax sp. SCN45

 Score = 99.8 bits (247), Expect = 3e-25
 Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 24/294 (8%)

Query: 157 SVAVDDRTNNIIAYQTVERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGARW-- 214
           +V  D  TN +I          LRR++  LD    QV++E+ IVE        LG +W  
Sbjct: 391 TVQADATTNTLIIAAPEPMYRSLRRVIDTLDQRRAQVLVESLIVEVTERDASELGIQWMA 450

Query: 215 ---GGRLNRGNWGAGGIAKPPPEGAAPPENPPPSPFVDLGSLTGTSGL-GIAYITDNLLL 270
               GR  R     GG A   P      E  P    +++G + GT  L G+  I   L L
Sbjct: 451 GGGNGRGVRAGTNFGG-ATLNPNARNTIEAMPRG--LNIGIVDGTVNLPGVGEI---LNL 504

Query: 271 DLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQE--------SSSSGATSVSF 322
            +   A++      I+S P ++T D E A I+ G  +P+          SS++   ++  
Sbjct: 505 KMLARALQAKDGANILSTPNILTLDNEAASIMVGKTVPFVSGQYITNGNSSTNPFQTIQR 564

Query: 323 KEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDVPPIKKNE--VNAKVLVKDGET 380
           ++  L L + PQI+    V +++       D   + +D+  I  N+  ++  +LV DG+ 
Sbjct: 565 EDIGLKLNIRPQISEGGTVKLDIYQEVSTID--TQASDISGIVTNKRALDTSILVDDGQI 622

Query: 381 IVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNN 434
           +V+GG+  ++ +   + VP LG +P +G LFR D     K+ L+VFL P ++ +
Sbjct: 623 MVLGGLMEDSVANGTEAVPGLGALPVVGNLFRYDKRQRVKTNLMVFLRPYVIRD 676



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 17/178 (9%)

Query: 28  DKLSLNFQSIELRTALQQIADVAGLNLVASDDVQGSITL----RLKDVSWDQALDLVLQA 83
           DK+ LNF   ++ + +  +A   G N +    V+G ITL     +   +    L   L+ 
Sbjct: 40  DKVVLNFVDADITSVVSALARFLGRNFLFDPRVKGQITLVSEGEVPAATAYGMLSTALRM 99

Query: 84  KGLDKRVKAGVLLVAPAEELAARELLTLESRKQMAELAPLRRELLQVNYAKAADLAKLFQ 143
           +G        V  V P  + A  +  ++ +R     LA       ++NY  A  +  + +
Sbjct: 100 RGFAIVDVGEVSRVVPVAD-AKLQGGSVNTRNPGGGLA---TRTFRLNYENAEAMLPVLK 155

Query: 144 SVTGLEGVTDERGSVAVDDRTNNIIAYQTVERLEELRRIVAQLDIPVRQVMIEARIVE 201
            +   E       S+      N ++    ++ LE L RI+  +D P     ++A +V+
Sbjct: 156 PLIAAE------NSINAYPANNTLVVTDYIDNLERLARIIESIDTP---TSLDAEVVK 204