Pairwise Alignments

Query, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417

Subject, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

 Score =  127 bits (319), Expect = 9e-34
 Identities = 107/392 (27%), Positives = 178/392 (45%), Gaps = 52/392 (13%)

Query: 86  LDKRVKAGVLLVAPAEELAARELLTLESRKQMAELAPLRREL-----------LQVNYAK 134
           +D RV  GV+   PA    A +L+  + R  +  +A L R+L            QV Y +
Sbjct: 154 IDPRV--GVITPYPA----AHQLVVTDWRSNLERIASLLRQLDRPQEVPGSGSTQVIYLR 207

Query: 135 AADLAKLFQSVTGL--------EGVTDERGS--------------VAVDDRTNNIIAYQT 172
            A+  ++ + + GL        EG  +  G               +  ++ TN ++    
Sbjct: 208 HANAGEVVKVLRGLSQEGAVPVEGAGEAEGKDRPVVPAAGGSGIRLEYEEGTNAVVMVGP 267

Query: 173 VERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGARW---GGRLNRG--NWGAGG 227
              L   R IV QLDI   QV++EA I E +    + LG +W     +   G  N+G+ G
Sbjct: 268 DSELAAYRAIVEQLDIRRAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNG 327

Query: 228 IAKPPPEGAAPPENPPPSPFVDLGSLTGTSGLGIAYITDNLLLDLELTAMEKTGNGEIVS 287
           +      GAA   +       DL S T  +  GI +        + + A++      ++S
Sbjct: 328 VNIASIAGAAASGDN--EALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLS 385

Query: 288 QPKVVTSDKETARILKGTEIPY-----QESSSSGATSVSFKEASLSLEVTPQITPDDRVI 342
            P ++T D   A IL G E+P+      +++++   ++  KE  + L + PQI  D+ V 
Sbjct: 386 TPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVR 445

Query: 343 MEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPFLG 402
           +++          +  +DV    K E+  KV+V+D   +++GG+ S+  S    +VP LG
Sbjct: 446 LDIVQEVSSIADTSSASDVIT-NKREIKTKVMVEDNGLVILGGLISDELSTSDQRVPLLG 504

Query: 403 DVPYLGRLFRRDVLAEKKSELLVFLTPRIMNN 434
           D+PYLGRLFR D     K  L+VF+ PRI+ +
Sbjct: 505 DIPYLGRLFRSDATRNTKQNLMVFIRPRILRD 536



 Score = 25.8 bits (55), Expect = 0.004
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 32 LNFQSIELRTALQQIADVAGLNLVASDDVQGSITLRLKDV 71
          +NF   EL   +  ++ + G   +    V+G +T+R  D+
Sbjct: 35 VNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTVRTVDL 74