Pairwise Alignments

Query, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417

Subject, 733 a.a., type II secretion system secretin GspD from Erwinia tracheiphila SCR3

 Score = 95.1 bits (235), Expect = 7e-24
 Identities = 81/295 (27%), Positives = 131/295 (44%), Gaps = 22/295 (7%)

Query: 154 ERGSVAVDDRTNNIIAYQTVERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGAR 213
           E  SV  D   N ++ +   E + E+  I+ +LDI   QV++EA IVE       +LG  
Sbjct: 388 EGASVHADKANNALVVHAPEEEMREIESIINKLDIRRNQVLVEAIIVEIQDADGLNLGVS 447

Query: 214 WGGRLNRG-NWGAGGIAKPPPEGAAP-PENPPPSPFVDLGSLTGTSGLGIAYITDNLLLD 271
           W   L  G  + + G +      A    EN P +      +L  + GL   +   N    
Sbjct: 448 WANALGGGFGYNSDGDSNRVTRAANGFGENQPIA-----SALKESGGLVAGFYHGNW--G 500

Query: 272 LELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGAT-----SVSFKEAS 326
              +A+E   +  I++ P +VT D   A    G +IP    S +  +     +V  +   
Sbjct: 501 FLFSALESNKHNNILATPSIVTLDNRQAEFNVGQDIPILTGSQTTNSDNIFNTVERRTVG 560

Query: 327 LSLEVTPQITPDDRVIMEVK------VTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGET 380
              ++   I   + V + +          +  +  +KL  V  I+   VN  V V++GET
Sbjct: 561 FKFKIRSMIDQGNTVQLYISQEISSLTDANTANIDSKLGAVFNIRT--VNNVVQVENGET 618

Query: 381 IVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNNQ 435
           +VIGG+    Q+  V KVP LGD+P++G LFR     + K  L++F+ P I+  Q
Sbjct: 619 VVIGGLLDKEQNNRVSKVPLLGDIPWIGGLFRYTSHNDTKRNLMLFIRPHIIRVQ 673