Pairwise Alignments

Query, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

 Score =  286 bits (733), Expect = 8e-82
 Identities = 177/465 (38%), Positives = 253/465 (54%), Gaps = 21/465 (4%)

Query: 1   MAIKVLLVEDDRALREALADTLLLAGHDYRAVGSAEAALEAVEQESFSLVVSDVNMPGMD 60
           M   +L+VEDD  L + +   L L G++     SAE ALE +++     V++D ++PGM 
Sbjct: 1   MEHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMS 60

Query: 61  GHQLLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFE--------PKALIE 112
           GH LL  L A+ P L V++MT +G VE AV AM++GA  YL KP           KAL  
Sbjct: 61  GHDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALAT 120

Query: 113 LVVRHALGVIPPSD----------GEGPI--AFEPASAQLLELAARVARSD-STVLISGE 159
             +   L      +          GE P+    +    Q+L+   R+A  D   VLI GE
Sbjct: 121 ERMERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGE 180

Query: 160 SGTGKEVLARYIHQQSTRAKQPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFE 219
           +GTGKE++AR +H   +R+K PFI  NCA+IP N+LEA LFGHEKG+FT A   + G  E
Sbjct: 181 TGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVE 240

Query: 220 QADGGTILLDEISEMPLGLQAKLLRVLQEREVERVGARKPIQLDIRVVATTNRDLAGEVA 279
            ADGGT+ LDEI EM L LQAKLL++L++R + R+GA K  ++D+RV++ TN +L   V 
Sbjct: 241 AADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQ 300

Query: 280 AGRFREDLFYRLSVFPLAWRPLRERPADIIPLAERLLNNHVKKMKHAQAGLSAEAQACLI 339
            G+FR DLF+RL +  L    L  R  DI+ LA   L +H ++        SAEA++ L+
Sbjct: 301 QGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLL 360

Query: 340 AYPWPGNVRELDNAIQRALILQQGGLIQPQDFCLAMGSGAAPLPTLAPTPVVVEAETAGA 399
            Y WPGNVREL N +++ ++L    ++Q     L M     PL       +         
Sbjct: 361 GYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRHEPE 420

Query: 400 LGDDLRRREFQMIIDTLRSERGRRKEAAERLGISPRTLRYKLAQM 444
            G  L   E  ++  TL        ++A  LG+S   LRY++ ++
Sbjct: 421 PGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKL 465