Pairwise Alignments

Query, 247 a.a., flagellar biosynthesis protein flip from Pseudomonas simiae WCS417

Subject, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

 Score =  142 bits (359), Expect = 4e-39
 Identities = 82/215 (38%), Positives = 132/215 (61%), Gaps = 20/215 (9%)

Query: 43  LQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIM 102
           L + L + AL+ +P  +++ TSF +I+IV  I R A+G+QQ P +  + G+AL  TLFIM
Sbjct: 9   LILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIM 68

Query: 103 APVFDKVNQQALQPYLAEKMTAQDAID------KAQGPIKDFMLSQTRSSDLELFMRLSK 156
           APV      +  +   A  +     I+      +A  P++ FML   R+ D ++   L +
Sbjct: 69  APV----GYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFML---RNVDPDVLTHLLE 121

Query: 157 RTDIATP-------DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMG 209
            T    P        +  L +LVPAFV S+L+  F+IGF+I+IPF++IDL+V+++L+A+G
Sbjct: 122 NTARLWPAKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALG 181

Query: 210 MMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 244
           M M+SP+ ISLP K++LFV+V GW+ ++ +L  S+
Sbjct: 182 MQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSY 216