Pairwise Alignments

Query, 378 a.a., flagellar biosynthesis protein FlhB from Pseudomonas simiae WCS417

Subject, 365 a.a., type III secretion system protein from Pseudomonas simiae WCS417

 Score =  135 bits (340), Expect = 2e-36
 Identities = 104/354 (29%), Positives = 181/354 (51%), Gaps = 27/354 (7%)

Query: 4   SESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGAGALLIYGGGLALDLMELMK 63
           S+SG+ K    + K+ +D R+KG++A+S+++  +  + A +   L           +LM 
Sbjct: 2   SDSGEKK-HPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLM- 59

Query: 64  HNFTLPRDVLLNP----------DAMGQYLLHSGKIAILAVQPILITLLLAALIGPVALG 113
               LP   L  P          D +G +       A+L V   + T L+++ +      
Sbjct: 60  ---LLPISRLNQPFTRALEEVLFDGLGVFF----SFALLMVGVAITTKLISSWMQ----F 108

Query: 114 GWLFAAGSMAPKFSRMNPAAGLKRMFSTKALVELLKALAKFILILFVALMVLSSDIDDLL 173
           G LFA  ++   F+R+NP + +K+MFS + L+ LL ++ K  LI  +  +V+   +  L+
Sbjct: 109 GLLFAPEALKMDFNRLNPVSQVKQMFSAQQLMNLLMSVTKAFLIGLILYVVIRPSVGTLI 168

Query: 174 RIAHEPLESAIIHSVQVVGWSALWMAAGLIIIAAVDAPIQLWESHKKLLMTKQEVRDEHK 233
            +A   L+S I+  + +           L+++A VD  +      K++ MT+ EV  E+K
Sbjct: 169 NLATSDLQSYIVALIALFRHLLHVCLGMLLVLALVDLILSKHFFAKRMRMTQVEVVKEYK 228

Query: 234 DQEGRPEVKQRIRQLQREMSQRKMMAAVP---DADVVITNPTHYAVALKYDPEKGGAPML 290
           D EG P VK + R L  +++Q +    +P   ++D+++ NPTH+AVAL Y P K   PML
Sbjct: 229 DMEGDPHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPML 288

Query: 291 LAKGSDFTALKIREIAVANDILLLESPELARSIFYSTDLDQEIPAGLYLAVAQV 344
           ++KG+D  A K+   A A D+ +++   LAR++ Y+  L   IP     AVA +
Sbjct: 289 VSKGTDDEARKLIRRAKAADVPVIQCVWLARTL-YTKKLGASIPRETLQAVALI 341