Pairwise Alignments

Query, 246 a.a., flagellar biosynthesis sigma factor from Pseudomonas simiae WCS417

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  439 bits (1130), Expect = e-128
 Identities = 220/246 (89%), Positives = 234/246 (95%)

Query: 1   MTATGYNAYKRSARDSQGELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVS 60
           M A+G+  Y R+A+D+Q ELIERYAPLVKRIAYHLLARLPA+VQVEDLIQAGMIGLLEV+
Sbjct: 1   MNASGFKMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVA 60

Query: 61  TKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAK 120
            KYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDA+RA+EA+TGRDAK
Sbjct: 61  NKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAK 120

Query: 121 DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASAHMEPSRDLEDE 180
           DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGAS  +EP+R LE+E
Sbjct: 121 DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEE 180

Query: 181 RFQGALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRL 240
           RFQ AL +AIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLR RL
Sbjct: 181 RFQAALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRL 240

Query: 241 GEWRAR 246
           GEWRAR
Sbjct: 241 GEWRAR 246