Pairwise Alignments

Query, 735 a.a., chemotaxis protein CheA from Pseudomonas simiae WCS417

Subject, 890 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  322 bits (826), Expect = 4e-92
 Identities = 176/431 (40%), Positives = 272/431 (63%), Gaps = 12/431 (2%)

Query: 315 PAPAPAA--KPAPAAAPAPARAA-AAPVADKPASEAETTVRVDTARLDDIMNMVGELVLV 371
           PAPAPAA  KPAPA   A A A  AA  A +    A  ++RV    L+ +M MV ELVL 
Sbjct: 173 PAPAPAAPPKPAPAMPKADADATHAAAQAGEAHGVAAQSIRVHVGVLEQLMTMVSELVLT 232

Query: 372 RNRLVRLGLSSGDEAMQKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQL 431
           RN+L+ +     +   + ++  L  VT +LQ AVM+TRMQPI   + + PR+VRDLA++L
Sbjct: 233 RNQLMEIARRHDEPEYKVSLQRLSNVTGELQEAVMRTRMQPIGNAWQKLPRIVRDLAQEL 292

Query: 432 KKEINLELVGEETDLDKNLVEALADPLVHLVRNAVDHGVETPEEREASGKSRNGKVILAA 491
            K+I LE VG +T+LD+ +++ + DPL H+VRN+ DHG+E PE+R A+GKS  G + L+A
Sbjct: 293 GKQIELEQVGADTELDRQVLDQIKDPLTHMVRNSADHGLEMPEQRRAAGKSERGLIRLSA 352

Query: 492 EQEGDHILLSITDDGKGMDPAILRNIAVKRGVMDKDAADRLTDSECYNLIFAPGFSTKTE 551
             EG H+++ I+DDG+G+D A ++  A++ G+  +    ++ DS+ +  IF  GFST  +
Sbjct: 353 YHEGGHVIVEISDDGRGLDVARIKQKALENGLATEAELAKMPDSQVFRFIFHAGFSTAQK 412

Query: 552 ISDVSGRGVGMDVVKTKISQLNGSINIYSTKGQGSKIVIKVPLTLAIMPTLMVMLGNQAF 611
           +++VSGRGVGMDVV++ +  + G++++ S +G+GS  VIK+PLTLAI+P L+V    + F
Sbjct: 413 VTNVSGRGVGMDVVRSNLESIGGTVDVRSRQGEGSTFVIKIPLTLAIVPALIVRAAGERF 472

Query: 612 AFPLVNVNEIFHLDLSRTNVV---DGQEVVIVRDKALPLFYLKRWLVASAKHEEQRE--- 665
           A P   V E+  +     + +   +   V+ +RD+ LP+  L   L  S + + + E   
Sbjct: 473 ALPQSAVEELVRVQAGSDHEITWLNNSPVLGLRDRLLPIVSLGALLGLSPERDGRDEALW 532

Query: 666 --GHVVILSVGTQRIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDV 723
               +V++ VG Q  G VV+ +   EE+V+KP+   L+  P +SG+TI GDGR+ +ILD 
Sbjct: 533 ERALIVVMKVGHQTFGVVVEAVSHTEEIVVKPMASALRQLPMVSGSTILGDGRVIMILD- 591

Query: 724 PSMLKRYAARR 734
           P+ L ++AA R
Sbjct: 592 PAGLAQHAAAR 602



 Score = 85.5 bits (210), Expect = 1e-20
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 6/180 (3%)

Query: 7   EEILQDFLVEAGEILEQLSEQLVELESRPDDANLLNAIFRGFHTVKGGAGFLQLHELVEC 66
           +++L++FL E  E L+    +LV+ E  P++A +LN IFR  HT+KG  GF+ L  L   
Sbjct: 2   DDLLREFLTETSESLDVADVELVKFEQDPNNAQILNNIFRLVHTIKGTCGFIGLPRLASL 61

Query: 67  CHIAENVFDILRKGERHVDSELMDVILEALDAVNGMFSEVRER--APITAATPELLAALA 124
            H AE + D  R+G R V ++ + ++L  +D +  +   V E   +       +L++ L 
Sbjct: 62  AHAAETLMDRFREG-RPVTTDAVGLVLSTIDRIKLLLQHVEETEGSEPEGEDRDLISLLE 120

Query: 125 RYAEPADLSAAPVAEA-APEPVAEAEPDVTDSE--FEQLLNSLSAVKAEAEAPAAAVAAP 181
             AE  D  AAP   A  P+P    E  +   E   ++L       K +   PA A AAP
Sbjct: 121 AMAEAVDAPAAPPPPAPPPQPAQTLERPLLPGELPLDELDRIFRETKVDPLPPAPAPAAP 180