Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 57.8 bits (138), Expect = 9e-14
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 25  LVKIAARITGCRSRAEDVVQDAYFRLQSAPTITSSFKAQLSYLFQIVRNLAIDHYRKQAL 84
           LV   +   G R  AEDV  DAY R+    T +   +   ++L++   NL +D +R+Q +
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLER-TGSEQIEHPRAFLYRTALNLVVDRHRRQLV 66

Query: 85  ELKYSGTEEEGLNVVIHGASPETSHINFNT-----LENIADALTELPQRTRYAFEMYRLH 139
                  + E L+ +   +   +S +  +      L  +  AL EL +  R +F + ++ 
Sbjct: 67  R------QAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIE 120

Query: 140 GVPQKDIAKELGVSPTLVNFMIRDALVHCR 169
           G+  + IA+ LG+S +LV   I +A+ HCR
Sbjct: 121 GLSHQQIAERLGISRSLVEKHIVNAMKHCR 150