Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 74.3 bits (181), Expect = 2e-18
 Identities = 48/158 (30%), Positives = 76/158 (48%)

Query: 12  SPLLQAFVDNRLILVKIAARITGCRSRAEDVVQDAYFRLQSAPTITSSFKAQLSYLFQIV 71
           S LL +F ++   L++   R    R RA DV Q+ Y +L +            S++F++ 
Sbjct: 7   SGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVA 66

Query: 72  RNLAIDHYRKQALELKYSGTEEEGLNVVIHGASPETSHINFNTLENIADALTELPQRTRY 131
            NLAID  R++          +    V     +PE + +    L+ +  AL +LP   R 
Sbjct: 67  GNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQ 126

Query: 132 AFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCR 169
           A  + R+ G+ QK +A+ LGVS ++V   I  AL HCR
Sbjct: 127 ALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCR 164