Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 65.1 bits (157), Expect = 6e-16
 Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 18  FVDNRLILVKIAARITGCRSRAEDVVQDAYFRLQSAPTITSSFKAQLSYLFQIVRNLAID 77
           F+  RL L++   R+ G  S AED++Q+ Y R+  A         +  ++FQ  RNLA+D
Sbjct: 10  FLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIE-PFVFQTARNLALD 68

Query: 78  HYRKQALELKYSGTEEEGLNVVIHG-ASPETSHINF----NTLENIADALTELPQRTRYA 132
           H R + ++ +     ++  + V+H  A+P TS  +       L++++ +L +L +R +  
Sbjct: 69  HLRARRVQARM--LVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRI 126

Query: 133 FEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKVS 172
           F + RLHG    +IA++L VSP+ V   ++  +  C  V+
Sbjct: 127 FILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVA 166