Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 16  QAFVDNRLILVKIAARITGCRSRAEDVVQDAYFRLQSAPTITSSFKAQLSYLFQIVRNLA 75
           + F+D+   L+    R    R +AED+  DA+ R+   P      +   +YL Q  RN+A
Sbjct: 5   KGFLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPR--EQVEQPRAYLHQAARNIA 62

Query: 76  IDHYRKQALELKYSGTEEEGLNVVIHGASPETSHINFNTL-ENIADALTELPQRTRYAFE 134
           +D +R+   E +    E E       G+    ++++   L +++  AL ELP   R  F 
Sbjct: 63  VDGFRR---EDRRQALEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFI 119

Query: 135 MYRLHGVPQKDIAKELGVSPTLV-NFMIRDALVHCRK 170
             +L G+ Q +IA+ +G+S  +V  +MIR  L H R+
Sbjct: 120 WQKLEGLTQAEIAERMGLSKNMVEKYMIR-TLRHLRE 155