Pairwise Alignments

Query, 820 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  218 bits (556), Expect = 1e-60
 Identities = 168/562 (29%), Positives = 263/562 (46%), Gaps = 25/562 (4%)

Query: 241  QQEKERAQITLESIGDGVITTDVDGAITYMNPAAEALTHWNSAQAQGLPLAALFNLLDDN 300
            +++   A    E     ++ TD  G I   N A   ++ +  ++     L  L  +L  +
Sbjct: 712  EKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEV----LDQLPGMLTVD 767

Query: 301  AQPDGFTLIEHIVKGQLSGGS-EHSKTIQRLDGSTVSVTL-VGAPIRSTGKVTGAVLVLH 358
             Q +G   + ++VK     GS E    ++R DG      + + A +   G +   V    
Sbjct: 768  EQQEGH--LRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFT 825

Query: 359  DMTQERQYIANLSWQATHDALTGLANRREFEFRLEQVLHPTAQQNGGRHALMFLDLDQFK 418
            D+++ +     +   A +DALT L NR  F+ RL   L    +Q      LMFLDLD+FK
Sbjct: 826  DISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWV-VLMFLDLDRFK 884

Query: 419  LVNDTCGHAAGDELLRHICALLQSDLREGDTLARLGGDEFGILLENCPAAVAEKIAESLR 478
             +ND+ GHAAGD +L+ +   L + + + DT+AR+GGDEF +LL+  P    E       
Sbjct: 885  PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQ--PRPTREMALNRAI 942

Query: 479  HTVQNL------HFVWKGRPFMTTVSIGLVHLGHTPTTLETSLRAADMACYMAKEKGRNR 532
            H  +N+       FV + R F  T SIG+       + L   ++ AD A Y AKE+G+N 
Sbjct: 943  HVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNN 1002

Query: 533  VQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQ-EISPLGQTNGGDGHIEILLRL 591
             Q Y A+ +  +L   E+     L  A+E+N F LY Q + S  G+   G    E LLR 
Sbjct: 1003 FQFYQAEMNASALERLELE--SDLRHAMEQNEFILYYQPQFSGDGKRLTG---AEALLRW 1057

Query: 592  HDEAGRIILPDSFIPAAERYGLMTSLDRWVVENVFKIINRCMQERPGLPMAMCAINLSGI 651
                  ++ P  FIP  E  GL+  +  WV+    + +    + +  +P    ++N+S  
Sbjct: 1058 RHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKV--SVNISAR 1115

Query: 652  TIGDDDFLGFLREKFHTYTIPPGMICFEITETSAIANLGSAIRFINELKALGCHFSLDDF 711
               D      +        +PP  +  E+TE+  +  +  A++ +  LK LG   ++DDF
Sbjct: 1116 QFSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDF 1175

Query: 712  CAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETP 771
              G SS  YLK  P+D LKID +FV  + +   +  +   I  + H +    IAE VET 
Sbjct: 1176 GTGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETH 1235

Query: 772  QIEQALLEIGVDYAQGYLIERP 793
            +  + L E G D  QGYL  RP
Sbjct: 1236 EQLEFLREHGCDEVQGYLFGRP 1257



 Score = 31.6 bits (70), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 219 IVLALLRTHKLLTQRHAFADALQQEKERAQITLESIGDGVITTDVDGAITYMNPAAEAL- 277
           +V  ++   K +T +   + +L+  ++R ++  ESI D + +TD    + Y++P+ +++ 
Sbjct: 554 LVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVL 613

Query: 278 ---------THWNSAQAQGLPLAALFNLLD 298
                      W S  A    L  +++L++
Sbjct: 614 GYQADWIFANGWQSIVANPAQLTGIYSLME 643