Pairwise Alignments

Query, 276 a.a., flagellar motor switch protein FliY from Pseudomonas simiae WCS417

Subject, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 64.7 bits (156), Expect = 2e-15
 Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 16/252 (6%)

Query: 13  VCLLGAAVAMTSLAASAFQQDGKIIAGSDVTFFPYEYMDNNKP-AGFDIEFMDGLGKVMG 71
           V  LG      + A  A  Q+ ++   S  T+ P+ + + +K   GFDI+ ++ + K  G
Sbjct: 7   VISLGLVATAATFALGAQAQNRELTVASSATYAPFAFENKDKQIVGFDIDIINAIAKQQG 66

Query: 72  RKVETLDTRFPNLITGLQAGRFDVTNSSMYITAERVKVIDMIPYLKSGESILTLKDSSFQ 131
            K++ ++T F  +   L  G  D+  S + I  +R +  D  P   +   ++ L  +S +
Sbjct: 67  LKIKIVNTPFTGIFGALNNGDVDLVISGVTINDKRKQSYDFTPPYFAARQLIALPKNS-K 125

Query: 132 PKTPEEFCGHKIGSMGATSWLAQMNKLSTEYCVAKGLKPIQISEYSTDPQTTQALLAHAV 191
             + ++  G KI  + A++     +  S E+    G     I  + + P     L    V
Sbjct: 126 VTSLKDLAGKKIAVVSAST---ADDIASREF----GKTSPDIRRFESTPLIISELAGGGV 178

Query: 192 EAQITD-AAVARGVIDKLGSRVVISSDTLIYPVLNGFG--VKKGNDTVKKALLDGLEKYR 248
           +A + D   +A  V      + +   D   +P   GFG  VKKG+  +   L  GL   R
Sbjct: 179 DAAMGDNGVIAYRVAQNPDLKTI---DDKSFPE-EGFGIVVKKGDKALLDKLTAGLAAIR 234

Query: 249 ATSEYAALLKKY 260
           A   Y  + KK+
Sbjct: 235 ADGSYVTIYKKW 246