Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas simiae WCS417

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 70.9 bits (172), Expect = 3e-16
 Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 23/232 (9%)

Query: 27  IEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLAPNKTLAAQLYGEFKAFFPNNAVE 86
           + A    QT   + G+  + +IA   +   R TL+L  +   A +L  E + F P+  V 
Sbjct: 9   MSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVL 68

Query: 87  YFVSY----YDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSATKALLERKDAIIVTTVS 142
            F  +    YD + P                  D I Q R+++   L E    I+V  ++
Sbjct: 69  PFPDWETLPYDLFSPH----------------QDIISQ-RIASLYRLPELSHGILVVPIT 111

Query: 143 -CIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDI 201
             ++ L      L   L +D G  +D  ++  RL +  Y   D  +    F VRG +ID+
Sbjct: 112 TALHRLAPTRFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDL 171

Query: 202 YPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFYPKSHYVTPRE 253
           +P  S L   RI+LFD+E+E+L  FDP T   I K+      P   +   +E
Sbjct: 172 FPMGSKL-PYRIDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKE 222



 Score = 40.4 bits (93), Expect = 5e-07
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 33/128 (25%)

Query: 468 GVRVRYLHSDIDTVER-----VEIIRDLRLGT---------------------FDVLVGI 501
           G +V YLH+D+ T+E+      E++ + R+G                      F+VLV  
Sbjct: 811 GGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVAS 870

Query: 502 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITGSMER 561
            ++  G+D+P  + + I  ADK G  +    L Q  GR  R+ +     YA  +T + ++
Sbjct: 871 TIIETGIDVPSANTIVIERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPTRQK 923

Query: 562 AIGETQRR 569
              + ++R
Sbjct: 924 VSADAEKR 931