Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas simiae WCS417

Subject, 1167 a.a., Transcription-repair-coupling factor from Acinetobacter radioresistens SK82

 Score = 57.4 bits (137), Expect = 4e-12
 Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 21/210 (10%)

Query: 41  GSGKTFSIANVIAQINRPTLVLAPNKTLAAQLYGE--FKAFFPNNAVEYFVSYYDYYQPE 98
           GS     +  +  Q  +  +++A N    AQL  E  F    P    ++ +  YD   P 
Sbjct: 41  GSSAALLLKEIAEQSRQLLVLVAKNNQHVAQLESELEFYGIKPIIFPDWEILPYDRLSPH 100

Query: 99  AYVPSSDTFIEKDASINDHIEQMRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVL 158
                 D   E+ A +++  +Q  L  + + L ++    V   S I G            
Sbjct: 101 -----QDIVSERLAILSNMPQQGILLLSASTLAQR----VAPTSWILGEH---------F 142

Query: 159 HVDRGDKLDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDD 218
            +  G K D  +   RL    Y   D  +    F VRG ++DIY A      IRI+LFDD
Sbjct: 143 DIRVGQKFDLEQQKLRLVQAGYLLVDTVYDHGEFAVRGSIMDIY-ASGQEAPIRIDLFDD 201

Query: 219 EVESLSAFDPLTGEVIRKLPRFTFYPKSHY 248
           E++SL  FDP T      L +F   P   +
Sbjct: 202 EIDSLKFFDPETQRTTSNLTQFKVLPAKEF 231



 Score = 37.0 bits (84), Expect = 5e-06
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 398 YEAEHAGRVIEQLVRPTGLVDPEIEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMS 457
           Y+ + A  +   +    G    E+ +R A   V +      K+VA+   V  T L ++  
Sbjct: 633 YDMQKAEPMDRLVCGDVGFGKTEVAMRAAFVAVQN-----NKQVAV--LVPTTLLAQQHY 685

Query: 458 EDLTDYLADHGVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGIN-LLREGLDMPEVSLV 516
           E   D  AD  VR+  L         V+ I+DL  G  D+++G + LL+E +   ++ L+
Sbjct: 686 ESFKDRFADWPVRIEVLSRFGSNKAHVKNIQDLADGKVDIVIGTHKLLQENVQFKDLGLM 745

Query: 517 AILDADKEGFLRSER 531
            + +  + G    ER
Sbjct: 746 IVDEEHRFGVRDKER 760



 Score = 35.4 bits (80), Expect = 2e-05
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 470 RVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 529
           RV   H  +   E  ++++      ++VLV   ++  G+D+P  + + I  ADK G  + 
Sbjct: 856 RVAVAHGQMRERELEQVMQQFYHKQYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ- 914

Query: 530 ERSLIQTIGRAARNLNGRAILYADRITGSMERAIGETQRRRDK-QIAFNLENG 581
              L Q  GR  R+ +     YA  +  S++   G+ ++R D  Q A NL  G
Sbjct: 915 ---LHQLRGRVGRSHHQ---AYAYLLVPSIKALKGDAEKRLDAIQRASNLGAG 961



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 10  FEPAGDQPEAIRQMVEGIEAGLAHQTLL-GVTGSGKT---FSIANVIAQINRPTLVLAPN 65
           +E   DQ  AI   +  ++       L+ G  G GKT      A V  Q N+   VL P 
Sbjct: 618 YEETLDQANAIEATLYDMQKAEPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVLVPT 677

Query: 66  KTLAAQLYGEFKAFF 80
             LA Q Y  FK  F
Sbjct: 678 TLLAQQHYESFKDRF 692