Pairwise Alignments

Query, 1098 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 733 a.a., Sensory box protein/GGDEF domain protein from Pseudomonas putida KT2440

 Score =  365 bits (937), Expect = e-105
 Identities = 219/565 (38%), Positives = 322/565 (56%), Gaps = 20/565 (3%)

Query: 524  QQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYVEVNDGFCRLTGYRAEEAIGLTL 583
            + +R    L+ SE++F   F  +P+ +   +R  G    VN    +L    A + +G   
Sbjct: 172  RHERDGQRLEESEQRFRSLFTYNPNPVFALDR-AGNIQSVNPAGLKLKAGAATDLVGHHF 230

Query: 584  YQIGIWAD---ENQR--AALLAELQIKGRINYLEMLWHNKRGELLAVEVSVEPITLN-ET 637
              +    D    NQ   AA   E Q      +   +      + L ++++  PI +N E 
Sbjct: 231  SHLVFEEDLPKVNQHFFAARAGEPQ-----RFEARVRDESDDKQLIMDIANLPIMVNGEI 285

Query: 638  PCLLLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLF 697
              +   ARD+S  K+ + Q+   A HD LT L NR  L DRL Q     ++  ++ A+++
Sbjct: 286  VGVFGIARDISKQKHYERQLSINASHDGLTGLLNRLSLEDRLVQACRSSRQRKVQLAVMY 345

Query: 698  LDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLLSGLDGTRTE 757
            +DLD FK INDS+GH  GD VL  V  RL   VR  DTV R+GGDEFVVLL+ L      
Sbjct: 346  IDLDGFKSINDSIGHYFGDQVLIEVAQRLTQQVRPADTVVRMGGDEFVVLLTDLLRDEDA 405

Query: 758  VSNQVQELADTLRELLSEPMFLDGHRLQVTPSIGVALIPDHGSTPADLLKRADIALYRAK 817
            V      +A+ L   + +P  + G  L V+ SIG+ +   H   P  L+++AD+A+Y+AK
Sbjct: 406  VP-----VAERLLASIGKPYCIQGIDLHVSTSIGITVSDGHIEQPMKLIQQADMAMYKAK 460

Query: 818  DSGRNTTQMFHNSMQKTASERLRMETDLRLALSRGEFSVHYQPQVDARGNRIVGAEALVR 877
              GRN  Q + + +     E   +  DL+ A+    FS+HYQPQ++AR  R+VG EAL+R
Sbjct: 461  QQGRNNFQWYTSDLNHRVCEHRSLRNDLQKAIKTQSFSLHYQPQIEARTRRVVGIEALLR 520

Query: 878  WQHPQLGAQSPSEFIKVLEDSGLILEVGTWILDEACAAFQQLIAEGLVDPLNFSLCVNIS 937
            W+HP  G  SP+ FI V EDSG I+ +  W+LD ACA  + L  +G       S+ VNIS
Sbjct: 521  WEHPVRGFISPAVFIPVAEDSGQIIPLSLWVLDTACAQLRDLCDQGFN---GISMAVNIS 577

Query: 938  PRQFRQNDFVERVERSLKQHKLPFSLLKLEITEGIVIQNLDDTISKMRRLKKLGVSFAMD 997
            P  F+   FVE ++  L +H L    L+LEITE +++ N++  I+ + RLK LGV  A+D
Sbjct: 578  PMHFQCGQFVECIQAVLSKHGLSAGQLELEITESLLLHNVEQAIATLHRLKDLGVRIALD 637

Query: 998  DFGTGYSSLTYLKRLPVDALKIDQSFVRDATHDPNDAEIIRAIVAMARSLNLEVIAEGVE 1057
            DFGTG+SSL+YLK LP+D +KID+SF++D + +P+DA I + I++MA  L+L V+AEGVE
Sbjct: 638  DFGTGFSSLSYLKCLPIDKIKIDRSFIQDISTNPHDAAITQGIISMAHHLSLSVVAEGVE 697

Query: 1058 TQDQLAFLQGLGCHLYQGYLHSRPL 1082
            T  Q+ FL+   C + QGY  +RP+
Sbjct: 698  TAPQVNFLERGRCDILQGYYFARPM 722



 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 20/233 (8%)

Query: 315 LHGLPPEPFH-----ESFDAFFEGMPDDERESMRNAYRTLREGPAGNYQLTYRVPMEDGS 369
           +HGLP  P        +F        D  R+     +R+L  G   N +  + +P+    
Sbjct: 78  IHGLPIGPQEGTCGTAAFRRELVVTADIARDPSWERFRSLALGY--NLRSCWSLPLLSHE 135

Query: 370 SRYLESRARLYRDEQGAP-------LRMAGTLLDITDQVERE-QRLTASEEKFASLFQVS 421
              L + A LY+D+  AP       L  A  L  I  + ER+ QRL  SE++F SLF  +
Sbjct: 136 GSVLGTFA-LYQDQAIAPSEVQIHRLTCAAQLAAIAIRHERDGQRLEESEQRFRSLFTYN 194

Query: 422 PDPICVTCLD-GGTFIEINPAFTQTFGWTAAEVIDKSAEQIGLWDESSKRLQRIERVIRE 480
           P+P  V  LD  G    +NPA  +     A +++      +   ++  K  Q        
Sbjct: 195 PNP--VFALDRAGNIQSVNPAGLKLKAGAATDLVGHHFSHLVFEEDLPKVNQHFFAARAG 252

Query: 481 QALSNVAIVAHHKNGQALTCVISSRLIKV-GDQPCIVTTLRDITQQQRSEAAL 532
           +     A V    + + L   I++  I V G+   +    RDI++Q+  E  L
Sbjct: 253 EPQRFEARVRDESDDKQLIMDIANLPIMVNGEIVGVFGIARDISKQKHYERQL 305



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 143 ITHQRDRENALSHSEKRFATLFHLCPNMVLLTRQADGLIS 182
           I H+RD +  L  SE+RF +LF   PN V    +A  + S
Sbjct: 171 IRHERDGQR-LEESEQRFRSLFTYNPNPVFALDRAGNIQS 209