Pairwise Alignments

Query, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

Subject, 319 a.a., ribose ABC transporter, periplasmic ribose-binding subunit from Pseudomonas putida KT2440

 Score =  457 bits (1176), Expect = e-133
 Identities = 239/320 (74%), Positives = 275/320 (85%), Gaps = 4/320 (1%)

Query: 1   MKLPFAGRLLAVAVLAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQ 60
           MKLPF GRLLA+AV+++ S ALPLS+A A+D  KPKV LVMKSLANEFF TM+DGAK YQ
Sbjct: 1   MKLPFPGRLLALAVISSLSLALPLSAAHAED--KPKVALVMKSLANEFFRTMEDGAKDYQ 58

Query: 61  KEHAADFDMITNGIKNETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGI 120
           K HA +F++I NGIKNETDT  QI IV QM+ A   A+VIAPADSKALV+ +KKA D G+
Sbjct: 59  KTHADEFELIANGIKNETDTGEQIRIVEQMVNAGAKALVIAPADSKALVSAVKKAMDQGV 118

Query: 121 KVVNIDNRLDPDVLKSKNLDIPFVGPDNRKGSKLVGDYLAKQ-LASGDKVGIIEGVPTTT 179
            V+NIDNRLDPD+LKSK + +PFVGPDNRKG++LVGDYLA Q L +GD+VGIIEGV TTT
Sbjct: 119 VVINIDNRLDPDLLKSKGISVPFVGPDNRKGARLVGDYLASQKLKAGDQVGIIEGVSTTT 178

Query: 180 NAQQRTAGYKDAMDAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALG 239
           NAQQRTAG+KDAMDAA MKIVS QSGNWEID+G  VA++ML+EYPDLKALLAGND+MALG
Sbjct: 179 NAQQRTAGFKDAMDAAQMKIVSVQSGNWEIDKGNAVAASMLNEYPDLKALLAGNDSMALG 238

Query: 240 AVSAVRAAGKAGKVLVVGYDNIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVKGE 299
           AVSAVRAAGK G+V VVGYDNI AIKPML+DGRVLAT DQAA+QQAV+GIQ ALK+VKGE
Sbjct: 239 AVSAVRAAGKTGQVQVVGYDNINAIKPMLEDGRVLATLDQAASQQAVYGIQAALKMVKGE 298

Query: 300 KVD-SKDGVIETPVELVLKK 318
           K D   D VI+TPVEL+ KK
Sbjct: 299 KPDVDADNVIQTPVELITKK 318