Pairwise Alignments

Query, 517 a.a., D-ribose ABC transporter, ATPase component RbsA (from data) from Pseudomonas simiae WCS417

Subject, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45

 Score =  553 bits (1426), Expect = e-162
 Identities = 296/511 (57%), Positives = 362/511 (70%), Gaps = 5/511 (0%)

Query: 1   MSSSAPNAVLSVSGIGKTYAQPVLSDITLTLNRGEVLALTGENGAGKSTLSKIIGGLVTP 60
           M+ +    VLS+S +GK YA PVL D++L LN GEVLALTGENGAGKSTLSKI+ GLV P
Sbjct: 1   MNDNRAQPVLSLSTMGKDYAAPVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQP 60

Query: 61  TTGHMQFNGQDFRPGSRTQAEELGVRMVMQELNLLPTLTVAENLFLDNLPSHCGWISRKQ 120
           T G M  +GQ F PGSR  AE LGVRMVMQEL L+ TL+VAENL LD LPS  GWI R +
Sbjct: 61  TRGQMLLDGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPSKTGWIRRGK 120

Query: 121 LRKAAIEAMAQVGLDAIDPDTLVGSLGIGHQQMVEIARNLIGDCHVLILDEPTAMLTARE 180
           L + A   +A++G+  IDP T V  LGIG QQMVEIARNL  D  VL+LDEPTAMLT RE
Sbjct: 121 LNELAARQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRE 180

Query: 181 VEMLFEQITRLQARGVAIIYISHRLEELARVAQRIAVLRDGKLVCVEPMANYNSEQLVTL 240
              LFEQI  L+ARGVAI+Y+SHRLEEL R+A R+AVLRDG+LV V  MA     +LV  
Sbjct: 181 TSHLFEQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQR 240

Query: 241 MVGRELGEHIDLGPRTIGGPALTVKGLTRSDKVRDVSFEVRAGEIYGISGLIGAGRTELL 300
           MVGR + EH     RT G   L+ +G+ R+  VRDV  ++RAGE+ G++GL+G+GRTEL+
Sbjct: 241 MVGRAVHEHEGRERRTAGPVLLSARGIGRAQVVRDVDIDLRAGEVMGLAGLVGSGRTELV 300

Query: 301 RLIFGADLADSGTVALGSPAQVV-----SIRSPVDAVGHGIALITEDRKGEGLLLTQSIS 355
           RL+FGAD AD G + L    Q V       RSP+ A+  GI L+TEDRK +GLLLTQSI 
Sbjct: 301 RLLFGADRADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQSIR 360

Query: 356 ANIALGNMPEISGGGVVNSRDETALAKRQIDAMRIRSSSPAQLVSELSGGNQQKVVIGRW 415
            N  L ++  IS  G +    E  +A++ ++ +RIRS S  Q V+ LSGGNQQKVV  RW
Sbjct: 361 VNATLSDLGAISRAGWLQRAKERGIAQKLVELLRIRSRSIEQPVATLSGGNQQKVVFARW 420

Query: 416 LERDCSVMLFDEPTRGIDVGAKFDIYALLGELTRQGKALVVVSSDLRELMLICDRIGVLS 475
           L R+C V+L DEPTRG+DVGA+ D+YA L  +T  GKAL++VSSDLRELM +CDRIGV+S
Sbjct: 421 LHRECKVLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRIGVMS 480

Query: 476 AGRLIETFERDSWTQDELLAAAFAGYQKRDA 506
           AGRL+  FER  WT+  LLAAAF+    R A
Sbjct: 481 AGRLVAVFERGEWTEQSLLAAAFSDATGRAA 511