Pairwise Alignments

Query, 325 a.a., D-ribose ABC transporter, permease component RbsC (from data) from Pseudomonas simiae WCS417

Subject, 331 a.a., D-ribose ABC transporter - permease subunit from Pseudomonas putida KT2440

 Score =  539 bits (1388), Expect = e-158
 Identities = 281/330 (85%), Positives = 304/330 (92%), Gaps = 6/330 (1%)

Query: 1   MKTT------TSPGKTGGNFYGLGTYLGLAGALLAMIALFSVLSDHFLSYDTFSTLANQI 54
           MKTT       +P +  G ++GLGTYLGLAGALLAMI LFS LS HF SY TFSTLANQI
Sbjct: 1   MKTTPLNNQDAAPVRRSGTYFGLGTYLGLAGALLAMIVLFSFLSSHFWSYGTFSTLANQI 60

Query: 55  PDLMVLAVGMTFILIIGGIDLSVGSVLALAASAVSVAILGWGWSVLPAAVLGMGCAALAG 114
           PDLMVLAVGMTF+LIIGGIDLSVGSVLALAAS VSVAILGWGW VLP+A+LGM  AALAG
Sbjct: 61  PDLMVLAVGMTFVLIIGGIDLSVGSVLALAASTVSVAILGWGWGVLPSALLGMAVAALAG 120

Query: 115 TITGSITVAWRIPSFIVSLGVLEMARGVAYQMTGSRTAYIGDSFAWLSNPIAFGISPSFI 174
           +ITG +TVAWRIPSFIVSLGVLEMARG+AYQ T SRTAYIGD++AW SNP+AFG+SP+FI
Sbjct: 121 SITGGVTVAWRIPSFIVSLGVLEMARGLAYQFTDSRTAYIGDAYAWFSNPVAFGVSPAFI 180

Query: 175 IALLVIIAAQLVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALF 234
           IALLVI+ AQLVLTRTVFGRYLIGIGTNEEAVRLAGI+P+PYK+LVF+LMGLLAG+AALF
Sbjct: 181 IALLVIVLAQLVLTRTVFGRYLIGIGTNEEAVRLAGIDPRPYKVLVFALMGLLAGLAALF 240

Query: 235 QISRLEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGA 294
           QISRLEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGA
Sbjct: 241 QISRLEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGA 300

Query: 295 TEPTKRIITGAVIVIAVVLDTYRSQRASRR 324
           +EPTKRIITGAVIVIAVVLDTYRS+RA RR
Sbjct: 301 SEPTKRIITGAVIVIAVVLDTYRSRRAGRR 330