Pairwise Alignments

Query, 394 a.a., hemolysin D from Pseudomonas simiae WCS417

Subject, 404 a.a., RND multidrug efflux membrane permease from Agrobacterium fabrum C58

 Score =  268 bits (684), Expect = 3e-76
 Identities = 156/385 (40%), Positives = 226/385 (58%), Gaps = 7/385 (1%)

Query: 13  AAVFLSLIVLAMLGGCSGGEPPPEAVTPK--VSVISIKPQSQVLTTELAGRTQAFMVAQI 70
           AAV L+ IVL    GCS  +    A  P   V V+++KP+   +T EL GR     +A++
Sbjct: 9   AAVLLTGIVLV---GCSDEQASAPAAPPPGAVKVVAVKPEELPITNELPGRIAPTRLAEV 65

Query: 71  RPQVGGIVQRRLFVEGADVKVGQALYQLDAASYTAALAQAEASLAKYRATLKSAQATARR 130
           RP+V GI+  R+F +G+ VK G  LY++D A +   +  AE +L + +A    A+ TA R
Sbjct: 66  RPRVSGIIVERVFEQGSLVKEGDVLYRIDRAPFQVRVDSAEGTLRRAQAAQLQARQTADR 125

Query: 131 DAELVKINAISQQDNEDAQATLLTAAADVQGAEADVQTARINLAYTRITSPVGGRIETST 190
             +L + N  SQQ+ ++A A L  A A+V  AEA V  AR+NL Y  + +P+ G I  + 
Sbjct: 126 QQQLRRSNVGSQQEFDNAIALLAQADAEVAVAEAGVAEARLNLQYADVKAPISGVIGRAR 185

Query: 191 VTPGALVVANQDSALTTVQQLDPIYVDVTQSTTELLKLKRDLASGALQSNGDGQARVSLK 250
           +T GALV A     L T+QQLDPIY D TQ   +L++L++ L  G L + G  +A V+L 
Sbjct: 186 ITEGALVSATGSENLATIQQLDPIYADFTQPAADLIRLRKALQDGQLMT-GQNEAEVNLL 244

Query: 251 LDDGSAYNQQGRLKVSGVSVNEGTGTVTLRAEFANPDHLLLPGMYVRAVLEQARNEQAIL 310
            DDGS Y   GRL  S  +V+E TG VTLR EF NP+  LLPGMYVR  ++Q   + A  
Sbjct: 245 FDDGSRYPVSGRLLFSEAAVDETTGQVTLRGEFPNPNGDLLPGMYVRVQIQQGIQKAAFA 304

Query: 311 VPQKAVNRSASGVTTALLV-VDGKVEQRELTIDRAVGNQWWVTAGLQAGDQLIVEGGQKV 369
           VPQ+AV R A G  + L+V  +  VEQR +++ R++G++W ++ GL  GD+++ EG QK 
Sbjct: 305 VPQQAVQRDAGGQASVLVVNAEDTVEQRRVSVGRSIGDRWVISEGLDDGDRVVAEGFQKT 364

Query: 370 RAGAAVQVQEANAQAATPRTPAKEG 394
             GA V+ +  + +         EG
Sbjct: 365 APGAKVKPEPWSQEPDVAAAAGSEG 389