Pairwise Alignments

Query, 1044 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 1037 a.a., multidrug transporter, RpoS-dependent (NCBI) from Escherichia coli BW25113

 Score = 1122 bits (2903), Expect = 0.0
 Identities = 582/1040 (55%), Positives = 755/1040 (72%), Gaps = 8/1040 (0%)

Query: 1    MAHFFIDRPIFAWVIAIVIMLGGSLSISQLPLEQYPDIAPPTVKISATYTGASAKTVEDS 60
            MA++FIDRP+FAWV+AI++ML G L+I  LP+ QYP IAPPT+ +SATY GA A+TVEDS
Sbjct: 1    MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTITVSATYPGADAQTVEDS 60

Query: 61   VTQVIEQQMKGLDNLTYMSATSSSAGSASISLTFTAGTDPDVAQMQVQNKLQQAESRLPQ 120
            VTQVIEQ M GLD L YMS+TS +AG+ASI+LTF  GT PD+AQ+QVQNKLQ A   LP+
Sbjct: 61   VTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPE 120

Query: 121  SVQSEGLTVTKGGSDFLMIVALASDDPSVTGTQIGDYISTTLLDSISRIDGVGDVQTLGS 180
            +VQ +G++V K  S+ LM+ A  SD+ S+    I DY+++ + D +SR  GVG VQ  GS
Sbjct: 121  AVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRTAGVGSVQLFGS 180

Query: 181  GYAMRIWLDPALLEKYALMPSDISSALEAQNTEVSAGQLGALPAIKGQQLNATISARSKL 240
             YAMRIWLDP  L KY L+PSD+ S ++ QN ++S GQLG +P    QQLNA+I  +++L
Sbjct: 181  EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQQLNASIIVQTRL 240

Query: 241  QTVDEFRKVVVKSNSDGAVVLLGDVATLELGSESYDISTALNGKPAAAMGVQLAAGANAL 300
            QT +EF K+++K   DG+ VLL DVA +ELG+E Y      NGKPAA + ++LAAGANAL
Sbjct: 241  QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANAL 300

Query: 301  NVGKAVKAKLKEMEPFYPTEMQLKNVIAYDTTPFVSLSIEEVVKALGEAIVLVVLIMFLF 360
            +  +AVK +L  +  ++P    LK V  YDTTPF+ +SI+EV K L EAI+LV L+M+LF
Sbjct: 301  DTSRAVKEELNRLSAYFPA--SLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLF 358

Query: 361  LQSLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENVER 420
            LQ+ RAT+IP I VPVV+LGTF +L+  G++INTLTMF MVLAIGLLVDDAIVVVENVER
Sbjct: 359  LQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENVER 418

Query: 421  LMGEG-LSPVAATRQSMREISGALVGITLVLSAVFIPMAFFGGSTGIIYRQFSVTIVSAM 479
            ++ E  L P  AT +SM +I  ALVGI +VLSAVF+PMAF  G+TG IYRQFS+T++S+M
Sbjct: 419  VIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITLISSM 478

Query: 480  VLSVLVAMTLTPALCATLLKARNGKGHGAQHGFFGWFNRTFERASAGYERWVGVVLRRWG 539
            +LSV VAM+LTPALCAT+LKA    GH   +  F  FN  FE+++  Y      +LR  G
Sbjct: 479  LLSVFVAMSLTPALCATILKAAPEGGH-KPNALFARFNTLFEKSTQHYTDSTRSLLRCTG 537

Query: 540  RSLLLYGLVLVVMAVGYVSLATSFLPDEDQGILLAQIQLPVGATDSRTQAVIKQFEDYIL 599
            R +++Y L+   MAV ++   TSFLP+EDQG+ +   QLP GAT   T  V++Q  DY L
Sbjct: 538  RYMVVYLLICAGMAVLFLRTPTSFLPEEDQGVFMTTAQLPSGATMVNTTKVLQQVTDYYL 597

Query: 600  --QQPEVEAMISISGLGMGGNSQNTARAFIRLKDWSERGGSGQGAAAIAQRATLALSSIG 657
              ++  V+++ ++ G G  G  QN   AFI LK WSER G      AI QRA +ALSSI 
Sbjct: 598  TKEKDNVQSVFTVGGFGFSGQGQNNGLAFISLKPWSERVGEENSVTAIIQRAMIALSSIN 657

Query: 658  DADAFVMQPPTVRGLGQSSGFDLQLKDLGGLGHDALVAAREQFLELARKDA-RLLGVRSN 716
             A  F    P V  LG +SGFD++L D G LGH+ L  AR + L LA +   ++ GVR N
Sbjct: 658  KAVVFPFNLPAVAELGTASGFDMELLDNGNLGHEKLTQARNELLSLAAQSPNQVTGVRPN 717

Query: 717  GLDDAPQLKVSIDDRKAGALSLSTSDINSTLATALGGTYVNDFLNQGRVKKVYVQGQASS 776
            GL+D P  KV+++  KA A+ ++ SDIN T++TA G +YVNDFLNQGRVKKVYVQ     
Sbjct: 718  GLEDTPMFKVNVNAAKAEAMGVALSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPF 777

Query: 777  RMQAADLDHWFVRNSNNEMVPFSSFASSTWGYGSPLLERYNGNASLEIVGDPAPGVSSGD 836
            RM   +++ W+VRN++  M P S+++S+ W YGSP LERYNG  S+EI+G+ A G S+GD
Sbjct: 778  RMLPDNINQWYVRNASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGD 837

Query: 837  AMAAVEAIVRQLPQGIGYEWTGQSYQLRLSGSQAPLLYGISVLFVFLCLAALYESWSVPF 896
            AM  +  +V +LP G+GY WTG SYQ  LS +QAP LY IS++ VFL LAALYESWS+PF
Sbjct: 838  AMKFMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPF 897

Query: 897  SVILVVPLGVIGAVLATRVAGLSNDVYFQVGLLTTVGLAAKNAILIVEFA-KHLQEQGSS 955
            SV+LVVPLGV+GA+LAT + GLSNDVYFQVGLLTT+GL+AKNAILIVEFA + +Q++G +
Sbjct: 898  SVMLVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKT 957

Query: 956  VIDATLVAVRQRLRPILMTSLAFMFGVLPLALSTGAGSAGRQAIGTGVLGGMFSATVLGI 1015
             I+A + A R RLRPILMTSLAF+ GVLPL +S GAGS  + A+GTGV+GGMF+ATVL I
Sbjct: 958  PIEAIIEAARMRLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAI 1017

Query: 1016 FFVPLFFVLIRGRFGRVRSA 1035
            +FVP+FFV++   F R + A
Sbjct: 1018 YFVPVFFVVVEHLFARFKKA 1037