Pairwise Alignments

Query, 311 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 318 a.a., BenABC operon transcriptional activator from Pseudomonas putida KT2440

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 80/316 (25%), Positives = 131/316 (41%), Gaps = 46/316 (14%)

Query: 19  DYWKEVVCRHCLAADSKPLSQSSFDGALAINTLGDLDICSLS--------SPLHYWERSE 70
           DY  + V +HC+        Q+S    L+     +LD+C +S        SP        
Sbjct: 23  DYVNQHVGQHCIGLSRTTHPQAS----LSHRKFAELDLCRISYGGSVRVTSPALETIYHL 78

Query: 71  RHLRSGPAEDLWLGFSRNGHGQIEQGGRKASLAAGNLFLYDATQAFRFSFG-GTENHLVR 129
           + L +G    LW G  R  H           L  G L L +       ++    E  +++
Sbjct: 79  QVLLNGNC--LWRGHKREQH-----------LVPGELLLINPDDPVDLTYSEDCEKFILK 125

Query: 130 IPRALLT-----ERLPRIADYTAMVLD----DRRPGVVPLREMLRQAASSPMSLQ--DEH 178
           +P  LL      +R  R       + +    D   G V L  M+   A    SL     H
Sbjct: 126 VPTRLLDSICDEQRWQRPDGGVRFLRNHYRLDELDGFVNLLAMVCHEAEVSDSLPRVQGH 185

Query: 179 ISNRYSGALIDLLVISLELQDLKTTHQELDLYGRIMQYIQRHLTEPDLSIDVIAQAHNVS 238
            S   +  L+ L+  ++  + L      L+   RI+ YI+R+L + +LS +V+A+   +S
Sbjct: 186 YSQIVASKLLTLMSTNIRRESLSAPQAGLE---RILDYIERNL-KLELSAEVLAEQACMS 241

Query: 239 TRTVTRAFARY----QKTPVAEIWKERLNASREAIERGQVRSVSQAALDFGFSDFSHFSH 294
            R++   F ++     K  V +   ER++A       G VRSV++ ALD+GF     FS 
Sbjct: 242 LRSLYALFDQHLGITPKHYVRQRKLERVHACLSDPTCG-VRSVTELALDYGFLHLGRFSE 300

Query: 295 AFRKAFGVAPNTLLRR 310
            +R+ FG  P+   +R
Sbjct: 301 IYRQQFGELPSQTFKR 316