Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 217 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  137 bits (344), Expect = 3e-37
 Identities = 80/199 (40%), Positives = 117/199 (58%), Gaps = 1/199 (0%)

Query: 117 LMWGLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDLSTIYVELVRGTPLLVQIFIF 176
           L+  L  T+ LS+++ + G I+G      RL           +YV+L +GTPLL+Q+F+ 
Sbjct: 13  LLMALRWTVVLSLIAFVGGGIVGALLLFLRLRGGRFANRAVGLYVQLFQGTPLLMQLFLA 72

Query: 177 YFFIGTV-LNLSREFAGIAALSLFTGAYVAEIVRAGVQSITRGQNEAARSLGLSASQSMR 235
           YF I    +++S   A   AL+L+T A++AEI R  V SI +GQ EA+ SL LS  + MR
Sbjct: 73  YFGIALFGIDVSAWTAASVALTLYTSAFLAEIWRGCVASIPKGQWEASGSLALSFGEQMR 132

Query: 236 HVVLPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELLKSGREVITTSFSPFEILFCVAG 295
           HV+LPQA K  + P  G  + ++K T+L SVI   EL K+G  +   +F PF +  CVA 
Sbjct: 133 HVILPQAVKIAIAPTVGFLVQVIKGTALASVIGFVELTKAGSMISNATFKPFVVFSCVAL 192

Query: 296 LYLLINLPLSKMASRLERR 314
           LY ++  P+S  A  LER+
Sbjct: 193 LYFVLCFPVSLYAKTLERK 211