Pairwise Alignments

Query, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  141 bits (356), Expect = 1e-38
 Identities = 77/205 (37%), Positives = 130/205 (63%), Gaps = 6/205 (2%)

Query: 117 LMWGLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDL---STIYVELVRGTPLLVQI 173
           L+ G   T+ ++  +  LG ++GL  G+ RL  NP  R +    T YV  +RGTPLLVQ+
Sbjct: 15  LLRGALVTVEITACALALGCVLGLLVGIGRL--NPKRRWIYGACTAYVAAIRGTPLLVQL 72

Query: 174 FIFYFFIGTVLNLSREF-AGIAALSLFTGAYVAEIVRAGVQSITRGQNEAARSLGLSASQ 232
           FI +F +     L   F  G+  L +++GAYV+EIVR  +QSI +GQ  AA+SLG++   
Sbjct: 73  FILFFGLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQTMAAQSLGMTPGV 132

Query: 233 SMRHVVLPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELLKSGREVITTSFSPFEILFC 292
           +MR +VLPQA  R++PPL  +FI+L+K+++LVS++ I +++  G+++I+ S+   E+   
Sbjct: 133 AMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKIISVSYRSLEVYLA 192

Query: 293 VAGLYLLINLPLSKMASRLERRLAQ 317
           +A +Y ++   ++ +    E++L Q
Sbjct: 193 IAVVYFVLTGTMTLILRHFEQKLRQ 217